New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1193628	5 (0.030)	10 (0.060)	3/136	30.0	0.43	intergenic (+93/‑158)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
	?	NC_014034	= 2474931	22 (0.090)					intergenic (‑94/+32)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

CCCCCAAGGTGACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTT  >  NC_014034/2474831‑2475031                                                                                                     |                                                                                                       cccccAAGGTGACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCcg                                                                                                       >  1:1195677/1‑101 (MQ=255) cccccAAGGTGACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGGGCGGGGGGG.GCAGccccccc                                                                                                       >  2:3498976/1‑100 (MQ=255)       aGGTGACAGGAAACCGCGGCCCCCCCCACCCGAAGGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGTTGC.GGGGGGCGCAGCCCCCCGCggggc                                                                                                 >  1:2596793/1‑99 (MQ=255)             cAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCggggccccccg                                                                                           >  1:784385/1‑93 (MQ=37)             cAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCCCggggtggcgcc                                                                                           >  2:950855/1‑93 (MQ=37)                    ccGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCGCCCCCGGGTTGc                                                                                    >  1:500718/1‑101 (MQ=25)                      gcgGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCGCCCCGGGGTTTccc                                                                                  >  1:1318469/1‑101 (MQ=25)                                               ggCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCGCCTCGGGGTTGCCCGCGGGGGCA.TCAGCCCCTCGGgttt                                                        >  1:2634824/1‑100 (MQ=21)                                                       cTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCGCCTCGGGCCTGCCCCAGGCGACA.TCAGCCCCTCGGGTTCGAGGGCAg                                                >  2:4559482/1‑101 (MQ=21)                                                          ggCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCGCCTCGGGCCGGCCCCCGGGGACA.TCAGCCCCTCGGTTTCGGGGGGGGGcc                                             >  1:3031755/1‑101 (MQ=18)                                                              aaaTACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCGCCTCGGGCTTGGCCGAGGCGACA.TCAGCCCTTCGGGTTCGAGGGCGGGCCCTTg                                         >  2:234391/1‑101 (MQ=25)                                                               aaTACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGCCGCCCCGGGCGTGCCCGGGGGGGCA.CCAGCCCTTCCGTTTTGGGGGCGGGGCCGTGt                                        >  2:4256216/1‑101 (MQ=12)                                                                      aaGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGAGCCTCGGGCCTGGCCGAGGCGACA.CCAGCCCTTCGGGTTCGAGGGCAGGACCTTGTCC.Tttcg                                >  2:815171/1‑101 (MQ=18)                                                                          cGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCCCCCCGGGCTTTCCCCAGGGGGCC.TCAGCCCCTCGGTTTCGGGGGGAGGCCCCTGTCC.tttggcggg                            >  1:495413/1‑94 (MQ=12)                                                                           ggggggTGC.GGGGGGCGCAGCCCCCCGCGGGTCGCCTCGGGGTTGCCCCAGGCGACA.GCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTgcgg                           >  2:3872753/1‑101 (MQ=25)                                                                            gggggTGC.GGGGGGCGCAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTgcggc                          >  1:2876307/1‑101 (MQ=255)                                                                            gggggTGC.GGGGGGCGCAGCCCCCCGCGGGTCGCCCCCGGGGTGCCCCAGGCGACC.TCAGCCCCTCGGTTTCGGGGGGAGGCCCCTGTCC.TTGCGTgcggc                          >  2:2491566/1‑101 (MQ=18)                                                                            gggggTGC.GGGGGGCGCAGCCCCCCGCGGGGCGCCCCCGGCTTGCCCGGGGCGGCA.TCAGCCCCTCCGGTTCGAGGGCCGGCCCTTGTTC.CCGCGGgcggc                          >  1:2912582/1‑101 (MQ=12)                                                                                 gtgcggggggCGCAGCCCCCCGCGGGTCGCCTCGGGCTTTCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCgtgt                      >  2:2820956/5‑101 (MQ=255)                                                                                   gcggggggCGCAGCCCCCCGCGGGGCGCCTCGGGCTTGCCCGGGGCGGCA.CCAGCCCCTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGGGttt                    >  1:1381075/3‑101 (MQ=25)                                                                                     ggggggCGCAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TTAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTttct                  >  1:2930686/1‑101 (MQ=255)                                                                                         ggCGCAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGCGGCGGCA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGGGGTTCTTTGc              >  1:4388479/1‑101 (MQ=37)                                                                                           cgcAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTTTCTTCGCCt            >  2:274791/1‑101 (MQ=255)                                                                                            gcAGCCCCCCGCGGGGCGCCCCGGGCTTTCCCCGGGCGGCACCCACCCCTCCGGTTT.GCGGGCAGGGCCCTGTCC.TTTCGTGGGGGGGGTTTCTTTGGCTc           >  2:4123025/1‑101 (MQ=255)                                                                                              aGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGGGTTTCTTCGCCTCGa         >  2:1322282/1‑101 (MQ=255)                                                                                                 cccccGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTTTCTTCGCCTCGACGt      >  2:2101284/1‑101 (MQ=255)                                                                                                  ccccGCGGGTCGCCTCGGGCTTTCCCGAGGCGACA.AAAGGCCTTTGGTTTTTCGGGGAGGTCCTTGTCCTTTGCTTGGGGCG.GTTTTTTTGCCTCgtcctt     >  2:2984704/1‑96 (MQ=9)                                                                                                   cccGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTTTCTTTGCCTCGACGTGc    >  2:3262486/1‑101 (MQ=255)                                                                                                     cgcgGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCtt  >  1:44347/1‑101 (MQ=255)                                                                                                     |                                                                                                       CCCCCAAGGTGACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGACA.TCAGCCCTTCGGTTTCGAGGGCAGGCCCTTGTCC.TTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTT  >  NC_014034/2474831‑2475031 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 39 ≤  ATCG