New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744791	21 (0.130)	3 (0.020)	2/138	31.5	0.17	intergenic (+176/+36)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 1965238	8 (0.030)					intergenic (+6/+86)	bdhA/RCAP_rcc01818	3‑hydroxybutyrate dehydrogenase/hypothetical protein
Rejected: Position hash score below cutoff.

GGCGGAGCCCC...................................................................................................................................  >  NC_014034/744781‑744791 ..........................................AATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGCACACAGGAAGACCGTCGTTCCCCCCAGT  <  NC_014034/1965238‑1965139            |||||||||||||||||||||||||||||||                                                                                                     ggcgcccCCCCGGCGGGTCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCG                                           <  2:365681/94‑1 (MQ=2)   gccccCCCGGGCGGGTCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCC                                         <  1:364286/96‑1 (MQ=0)         CCCGGCGGGTCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCC                                   <  2:580021/101‑1 (MQ=1)            gcCGGGTCCCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCG                                <  2:2642539/99‑1 (MQ=1)            atctGGTCGCCTCGGGCTTGCCCCGAGGCGATATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCG                                <  1:823962/97‑1 (MQ=0)             GCGGGTCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGG                               >  1:2443211/1‑101 (MQ=1)               GGGTCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGaa                             >  2:1705588/1‑99 (MQ=1)               GGGTCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGaa                             >  1:4596251/1‑99 (MQ=1)               GGGTCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGaa                             >  1:3152875/1‑99 (MQ=1)               GGGTCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGaa                             >  1:3058437/1‑99 (MQ=1)                GGTCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGagat                            >  2:823886/1‑97 (MQ=1)                GGTCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAAC                            >  2:3535799/1‑101 (MQ=1)                GGTCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAAC                            >  1:4507892/1‑101 (MQ=1)                  gCGCCTCTGGCGTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACAC                          <  2:1091875/100‑1 (MQ=0)                  TCGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACAC                          >  2:3948864/1‑101 (MQ=1)                   CGCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACA                         <  1:3673338/101‑1 (MQ=1)                    GCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAG                        >  2:3082505/1‑101 (MQ=1)                    GCCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAG                        >  1:566871/1‑101 (MQ=1)                     CCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGG                       >  2:3476186/1‑101 (MQ=1)                     CCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGG                       >  1:3348130/1‑101 (MQ=1)                     CCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGG                       >  2:2891047/1‑101 (MQ=1)                     CCTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGG                       >  2:513996/1‑101 (MQ=1)                      CTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGA                      >  2:3441377/1‑101 (MQ=1)                      CTCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGA                      >  1:1383696/1‑101 (MQ=1)                       TCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAA                     >  2:3928835/1‑101 (MQ=1)                       TCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAA                     >  1:1255363/1‑101 (MQ=1)                       TCGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAA                     <  1:1812584/101‑1 (MQ=1)                        CGGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAG                    >  2:4596469/1‑101 (MQ=1)                         GGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGA                   >  1:824126/1‑101 (MQ=1)                         GGGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGA                   >  2:2196700/1‑101 (MQ=1)                          GGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGAC                  <  2:2462156/101‑1 (MQ=1)                          GGCTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGAC                  >  1:86186/1‑101 (MQ=1)                            CTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCG                <  2:3689686/101‑1 (MQ=1)                            CTTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCG                >  2:3170983/1‑101 (MQ=1)                             TTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGT               >  2:2324147/1‑101 (MQ=1)                             TTGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGT               <  2:3624738/101‑1 (MQ=1)                              TGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTC              <  2:380306/101‑1 (MQ=1)                              TGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTC              >  1:1999823/1‑101 (MQ=1)                              TGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTC              >  1:2221441/1‑101 (MQ=1)                              TGCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTC              >  2:228164/1‑101 (MQ=1)                               GCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCG             <  2:4336776/101‑1 (MQ=1)                               GCCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCG             >  2:3514520/1‑101 (MQ=1)                                CCCCGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGT            >  1:1644215/1‑101 (MQ=1)                                   CGAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCC         >  2:1140185/1‑101 (MQ=1)                                   CGAGGCGAAATCTCCCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCC         >  2:4216719/1‑101 (MQ=0)                                    GAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCCC        >  1:2816309/1‑101 (MQ=1)                                    GAGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCCC        >  1:3293075/1‑101 (MQ=1)                                    GAGCCGAAACCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCCC        <  2:1838112/101‑1 (MQ=0)                                     AGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCCCC       >  2:2369724/1‑101 (MQ=1)                                     AGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCCCC       >  2:1826687/1‑101 (MQ=1)                                     AGGCGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCCCC       >  2:1930484/1‑101 (MQ=1)                                        CGAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCCCCCCA    >  1:189748/1‑101 (MQ=1)                                         GAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCCCCCCAG   <  1:4573769/101‑1 (MQ=1)                                         GAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCCCCCCAG   >  1:446277/1‑101 (MQ=1)                                         GAAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGCCGTTCCCCCCAG   <  1:2525230/101‑1 (MQ=0)                                          AAATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGAACACAGGAAGACCGTCGTTCCCCCCAGT  >  1:1564480/1‑101 (MQ=1)            |||||||||||||||||||||||||||||||                                                                                                     GGCGGAGCCCC...................................................................................................................................  >  NC_014034/744781‑744791 ..........................................AATCTCTCACAGCGCCGTCCAGCCGCCATCCACAGAAATCGTCGTGCCGGTGATCTGCGCCGCCGCCTCGGCACACAGGAAGACCGTCGTTCCCCCCAGT  <  NC_014034/1965238‑1965139 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG