New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744791	21 (0.130)	3 (0.020)	2/138	31.5	0.17	intergenic (+176/+36)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 1965238	8 (0.030)					intergenic (+6/+86)	bdhA/RCAP_rcc01818	3‑hydroxybutyrate dehydrogenase/hypothetical protein
Rejected: Position hash score below cutoff.

AACTGGGGGGAACGACGGTCTTCCTGTGTGCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTGCGCCTCGGGGCAAGCCCGAGGCGACCCGCC..GCGGGCTCCG.CC.CCGGACCCCCGAGGTATTTCAGGCAAGATGAAAGAGGGGCGCTCAGGCGGC  >  NC_014034/1965138‑1965332                                                                                                     |                                                                                                   aaCTGGGGGGAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGAtt                                                                                                    <  2:2875644/101‑1 (MQ=255) aaCTGGGGGGAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGAtt                                                                                                    <  2:3146981/101‑1 (MQ=255) aaCTGGGGGGAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGAtt                                                                                                    <  1:2366187/101‑1 (MQ=255)  aCTGGGGGGAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGAttt                                                                                                   <  1:1564480/101‑2 (MQ=255)   cTGGGGGGAACGGCGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGAtttc                                                                                                  >  1:2525230/1‑99 (MQ=255)   cTGGGGGGAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGAtttc                                                                                                  >  1:4573769/1‑99 (MQ=255)   cTGGGGGGAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGAtttc                                                                                                  <  1:446277/101‑3 (MQ=255)    tGGGGGGAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTtcg                                                                                                 <  1:189748/101‑1 (MQ=255)       ggggAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCt                                                                                              <  2:1826687/101‑1 (MQ=255)       ggggAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCt                                                                                              <  2:1930484/101‑1 (MQ=255)       ggggAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCt                                                                                              <  2:2369724/101‑1 (MQ=255)        gggAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGGTTTCGGCTc                                                                                             >  2:1838112/1‑101 (MQ=255)        gggAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTc                                                                                             <  1:3293075/101‑1 (MQ=255)        gggAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTc                                                                                             <  1:2816309/101‑1 (MQ=255)         ggAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGGGAGATTTCGCCTCg                                                                                            <  2:4216719/101‑1 (MQ=255)         ggAACGACGGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCg                                                                                            <  2:1140185/101‑1 (MQ=255)            acgacgGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCgggg                                                                                         <  1:1644215/101‑1 (MQ=255)             cgacgGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGc                                                                                        <  2:3514520/101‑1 (MQ=255)             cgacgGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGc                                                                                        >  2:4336776/1‑101 (MQ=255)              gacgGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCa                                                                                       <  1:2221441/101‑1 (MQ=255)              gacgGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCa                                                                                       >  2:380306/1‑101 (MQ=255)              gacgGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCa                                                                                       <  1:1999823/101‑1 (MQ=255)              gacgGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCa                                                                                       <  2:228164/101‑1 (MQ=255)               acgGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCaa                                                                                      <  2:2324147/101‑1 (MQ=255)               acgGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCaa                                                                                      >  2:3624738/1‑101 (MQ=255)                cgGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAg                                                                                     <  2:3170983/101‑1 (MQ=255)                cgGTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAg                                                                                     >  2:3689686/1‑101 (MQ=255)                  gTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGcc                                                                                   >  2:2462156/1‑101 (MQ=255)                  gTCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGcc                                                                                   <  1:86186/101‑1 (MQ=255)                   tCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGccc                                                                                  <  1:824126/101‑1 (MQ=255)                   tCTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGccc                                                                                  <  2:2196700/101‑1 (MQ=255)                    cTTCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCg                                                                                 <  2:4596469/101‑1 (MQ=255)                     ttCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGa                                                                                <  2:3928835/101‑1 (MQ=255)                     ttCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGa                                                                                <  1:1255363/101‑1 (MQ=255)                     ttCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGa                                                                                >  1:1812584/1‑101 (MQ=255)                      tCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAg                                                                               <  1:1383696/101‑1 (MQ=255)                      tCCTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAg                                                                               <  2:3441377/101‑1 (MQ=255)                       ccTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAgg                                                                              <  2:513996/101‑1 (MQ=255)                       ccTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAgg                                                                              <  2:2891047/101‑1 (MQ=255)                       ccTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAgg                                                                              <  1:3348130/101‑1 (MQ=255)                       ccTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAgg                                                                              <  2:3476186/101‑1 (MQ=255)                        cTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGc                                                                             <  1:566871/101‑1 (MQ=255)                        cTGTGTTCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGc                                                                             <  2:3082505/101‑1 (MQ=255)                         tgtgttCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCg                                                                            >  1:3673338/1‑101 (MQ=255)                          gtgttCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCACGCCAGAGGCgc                                                                           >  2:1091875/1‑100 (MQ=255)                          gtgttCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGa                                                                           <  2:3948864/101‑1 (MQ=255)                            gttccGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGAcc                                                                         <  1:4507892/98‑1 (MQ=255)                            gttccGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGAcc                                                                         <  2:3535799/98‑1 (MQ=255)                            atctcGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGAcc                                                                         <  2:823886/97‑1 (MQ=255)                             ttccGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGAccc                                                                        <  2:1705588/99‑1 (MQ=255)                             ttccGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGAccc                                                                        <  1:4596251/99‑1 (MQ=255)                             ttccGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGAccc                                                                        <  1:3152875/99‑1 (MQ=255)                             ttccGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGAccc                                                                        <  1:3058437/99‑1 (MQ=255)                               ccGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGACccgc                                                                      <  1:2443211/101‑1 (MQ=255)                                cGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGGGACccggc                                                                     >  2:2642539/1‑99 (MQ=255)                                cGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATATCGCCTCGGGGCAAGCCCGAGGCGAccagat                                                                     >  1:823962/1‑97 (MQ=255)                                   ggcggcggcGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGACccgcc..ggg                                                                >  2:580021/1‑99 (MQ=255)                                         ggcgCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTTAGAGATTTCGCCTCGGGGCAAGGCCGAGGCGAGccgcccggggggac                                                            >  2:4298098/1‑92 (MQ=255)                                         ggcgCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGGGCACCGCC...CGGGcgggc                                                         >  2:4244043/1‑97 (MQ=255)                                         ggcgCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGACccgcccgggggggc                                                            >  1:364286/1‑92 (MQ=39)                                           cgcAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGACCCGCC..GGgggggcgcc                                                        >  2:365681/1‑95 (MQ=38)                                                 tCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGACCCGCC..GGGGGGGCCC.cc.ccccc                                                >  1:1399186/1‑98 (MQ=37)                                                     cGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAAGCGACCCGCC..GCGGGGGCCC.cc.cccccgccc                                            >  2:4261370/1‑94 (MQ=255)                                                           gtcgttttGTGTGGGGGGCGGCGGGCCGGCGCTGTGAGAGTTTCCGCGGCGGGCCCACCCGGGGCCGACCCGCC..GGGGGCTCCGCCC.CCGGACCCCCGAgg                                       <  2:3753602/96‑1 (MQ=9)                                                                     gtgGATGGCGGCTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGACCCGCCGGGGGGGCCCCC.CC.CCGGCCCCCCCGGGGAttttggg                              >  1:2204294/1‑97 (MQ=16)                                                                             cggcTGGACGGCGCTGTGAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGACCCGCC..GGGGGCTCCG.CCACCGGACCCCCGAGGTATTTCAGGCAAGATGaa                     >  2:2817148/1‑101 (MQ=25)                                                                                             tgAGAGATTTCGCCTCGGGGCAAGCCCGAGGCGACCCGCC..GGGGGGTCCGCCC.CCCGACCCCCCAGGGATTTTCGGGAAGATGAAAAAgggggggccaggg     >  2:2971960/1‑92 (MQ=12)                                                                                                gagaTTTCGCCTCGGGGCAAGCCCGAGGCGACCCGCC..GGGGGCTCCGCCC.CCGGACCCCCGAGGGATTTCAGGCAAGATGAAAGAGGGGGGCGCAggcggc  >  2:366990/1‑101 (MQ=21)                                                                                                     |                                                                                                   AACTGGGGGGAACGACGGTCTTCCTGTGTGCCGAGGCGGCGGCGCAGATCACCGGCACGACGATTTCTGTGGATGGCGGCTGGACGGCGCTGTGAGAGATTGCGCCTCGGGGCAAGCCCGAGGCGACCCGCC..GCGGGCTCCG.CC.CCGGACCCCCGAGGTATTTCAGGCAAGATGAAAGAGGGGCGCTCAGGCGGC  >  NC_014034/1965138‑1965332 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG