New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	900803 =	42 (0.180)	24 (0.100)	18/194	25.0	0.35	intergenic (‑132/‑155)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
	?	NC_014034	= 2995638	48 (0.200)					intergenic (+178/+42)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

AACCCCGTTTCCG.CGCGG.CGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGC...C.GCGGA..G..CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCCA  >  NC_014034/900725‑900903                                                                                            |                                                                                                     aaCCCCGTTTCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCg                                                                                       >  2:3722259/1‑101 (MQ=16)   ccccGTTTCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGc                                                                                     >  2:3852406/1‑101 (MQ=16)    cccGTTTCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGcc                                                                                    >  1:4624299/1‑101 (MQ=16)      cGTTTCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCt                                                                                  <  2:2131546/101‑1 (MQ=16)      cGTTTCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCt                                                                                  >  1:75730/1‑101 (MQ=16)       gttcccgccgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTg                                                                                 <  2:3633764/93‑1 (MQ=16)           ccgcggcggccgccgcTTGGCCGCACCCCCGGTTTTCCTTGGTGCAAATCCGCC...CGGGGGGGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCgg                                                                             <  2:403654/91‑1 (MQ=12)           ccgccgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGG.CGGCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCgg                                                                             <  2:1790314/97‑1 (MQ=21)              ccccggccgccgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...GGGGGTTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGc                                                                          <  2:3137130/94‑1 (MQ=12)                gcggccgccgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGa                                                                        >  2:2834885/6‑101 (MQ=18)                ccgtcctccgcTTTGCCGCCGCCCCGGTTTTCTGTGGAGGAAACCCGCC...GGGGGGGGCGGGG.GCGGG..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGa                                                                        <  1:660209/94‑1 (MQ=2)                  ggccgccgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGaaa                                                                      >  2:2901134/4‑101 (MQ=18)                       ccgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGcccc                                                                 >  1:2711427/1‑101 (MQ=21)                        cgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGccccc                                                                >  1:3084185/1‑101 (MQ=18)                           tttGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCcgcg                                                             >  2:2648011/1‑101 (MQ=18)                            ttGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCcgcgc                                                            >  2:702966/1‑101 (MQ=18)                             tGCCGCAGCCCGGGTTTTCCTTGGTGCAAATACGCC...CGGGGGGGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCcgcgcg                                                           <  2:4410957/101‑1 (MQ=18)                             tGCCGCAGCCCCGGTTTGCCTTGGTGCAAAGACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCcgcgcg                                                           <  2:2113322/101‑1 (MQ=18)                              gCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGGGAAAGCCCCCgcgcgc                                                          >  2:2128691/1‑101 (MQ=18)                              gCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...AGGGGGGGCGGGG.GCGGA..GCCCCCGCGGGCAGCCCCGGCCCTGCCGGGGCGACAGCCCCCgcgcgc                                                          >  2:3132905/1‑101 (MQ=16)                                cGCAGCCCCGTTTTTCCTTGGTGAAAATGCGCCGGGGGGGGGGGG...G.GCGGACCC..CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGcgccg                                                        <  1:4663680/101‑1 (MQ=2)                                 gCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGcgccgc                                                       >  2:3550534/1‑101 (MQ=18)                                 gCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGcgccgc                                                       >  1:1864200/1‑101 (MQ=18)                                 gCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGcgccgc                                                       >  1:1340947/1‑101 (MQ=18)                                  cAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCcgcg                                                      >  1:4099414/1‑101 (MQ=18)                                   aGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCgg                                                     >  1:2226899/1‑101 (MQ=18)                                   aGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGAA..GCCCCCGCGGGTCGCCCCCGCCCTGCCGCGGCGAAACCCCCCGGGCGCCGCgg                                                     >  2:3182491/1‑101 (MQ=12)                                    gCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGc                                                    >  2:3040520/1‑101 (MQ=18)                                    gCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGc                                                    >  1:1956741/1‑101 (MQ=18)                                       ccGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCg                                                 >  1:3231048/1‑101 (MQ=18)                                         ggTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGc                                               >  2:3787500/1‑101 (MQ=18)                                          gTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCa                                              >  2:2972276/1‑101 (MQ=18)                                          gTTTTCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCa                                              >  1:1227844/1‑101 (MQ=18)                                           ttttCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTTGCCCCGGCCCTGCCGGGGCGACAGCCCCCGCGCGCCGCGGCCCGGcca                                             >  2:917310/1‑99 (MQ=21)                                           ttttCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCaa                                             >  2:570832/1‑101 (MQ=18)                                            tttCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCaaa                                            >  2:4073816/1‑101 (MQ=18)                                              tCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAg                                          >  2:1784825/1‑101 (MQ=18)                                              tCCTTGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAg                                          >  2:3647753/1‑101 (MQ=18)                                                 ttGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGctc                                       <  2:2711231/101‑1 (MQ=18)                                                  tGGTGCAAATCCGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGctct                                      <  1:2857270/101‑1 (MQ=18)                                                  tGGTGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGctct                                      >  1:2017187/1‑101 (MQ=18)                                                     tGCAAATACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGt                                   <  1:3830194/101‑1 (MQ=18)                                                          aTACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCagag                              <  2:1509957/101‑1 (MQ=18)                                                          aTACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCagag                              >  2:2712419/1‑101 (MQ=18)                                                           tACGCC...CGGGGGTGCGGGG.GCGGA..GCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGatcggaagagcgt                             >  2:1949592/1‑91 (MQ=12)                                                                                  gggcggagcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTaga            >  2:1120710/11‑101 (MQ=255)                                                                                   ggcggagcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTagag           >  1:2130837/10‑101 (MQ=255)                                                                                    gcggagcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGt          >  2:653115/9‑101 (MQ=255)                                                                                     ggatgcccccGCGGGTCGGCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGATGGGGCAACTTGGGCTAGAGTc         <  1:2648196/94‑1 (MQ=255)                                                                                     cggagcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAACTCTGGTCAGAGGGGGCAGCTTGGGGTAGAGTc         >  2:4567954/8‑101 (MQ=38)                                                                                      ggagcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCg        >  1:956352/7‑101 (MQ=255)                                                                                      ggagcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCg        <  2:728473/95‑1 (MQ=255)                                                                                        agcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGgc      >  2:971226/5‑101 (MQ=255)                                                                                        agcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGgc      >  1:834326/5‑101 (MQ=255)                                                                                         gcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGgcg     >  2:2786332/4‑101 (MQ=255)                                                                                           ccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGcc   >  2:2273475/2‑101 (MQ=255)                                                                                            cccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCCa  <  2:4623998/101‑1 (MQ=255)                                                                                            cccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCCa  >  1:4631433/1‑101 (MQ=255)                                                                                            |                                                                                                     AACCCCGTTTCCG.CGCGG.CGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCC...CGGGGGTGC...C.GCGGA..G..CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCCA  >  NC_014034/900725‑900903 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG