New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	900803 =	42 (0.180)	24 (0.100)	18/194	25.0	0.35	intergenic (‑132/‑155)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
	?	NC_014034	= 2995638	48 (0.200)					intergenic (+178/+42)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

AAGGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCC  >  NC_014034/2995541‑2995736                                                                                                    |                                                                                                      aaGGAAAACCCCTCCGGGTGCCCCCCCGCAACCGGTCGGCGCCCCAGCGCCCTGTTTTTCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGccccc                                                                                                    <  1:1808668/101‑1 (MQ=21)          cccTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGGCg                                                                                          >  1:2403200/1‑101 (MQ=255)              tCGGTTGCCGCCCCGCACCCCGTCGGCGGCCCGGCGCCCTGCTTTTCCTTGG.AAAAATCCG.CGGGGGGGTGGGGGGGGGGGAGCCCCCCG.CGGGTCGcccc                                                                                      <  2:3010775/101‑1 (MQ=21)               cGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGGCGCCCCg                                                                                     >  1:1951017/1‑101 (MQ=255)                      cgccCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGACGCCCCGGCttttc                                                                              >  2:2815451/1‑98 (MQ=255)                            gCACCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCg                                                                      <  2:2877615/101‑1 (MQ=255)                                   gTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCCGCTT..GCCGGGGGGAAATccc                                                               >  1:987598/1‑101 (MQ=255)                                      ggcggcCCAGCGCCCTGCTTTTCCTTGG.CAAAATACG.CCGGGGGGGGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCg                                                            >  1:4607369/1‑101 (MQ=255)                                         ggcCCGGCCCCCTGCTTTCCTGTGC.AAAAATCGG.CGGGGGGGTGCGGGGGGGGGGCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTc                                                         <  2:4436225/101‑1 (MQ=16)                                           cccAGCGCCCT.CTTTTCCTTGGACAAAATGCG.CGGGGGGGTGGGGGGGGGGGGCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAg                                                       <  2:403594/101‑1 (MQ=25)                                            ccAGCGCCCTGCTTTTCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGt                                                      >  2:1417389/1‑101 (MQ=255)                                               cggctttgtttttCCTTGG.AAAAATACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAgc                                                      >  2:2260547/10‑100 (MQ=0)                                                 gcCCTGCTTTTCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGGCGCCCCGGCTT..GCCCGGGCGAAATCCCCCGCCCAATCCCag                                                 >  2:1915329/1‑101 (MQ=18)                                                      gtttttCCTTGG.AAAAATACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcat                                               >  1:1058553/3‑96 (MQ=0)                                                        ttttCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACttt                                          >  1:2991227/1‑101 (MQ=255)                                                         tttCCTGGG.CAAGAGACG.GCGGGGGGGGGGGGGGGGGCGGGCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTc                                         <  1:1362820/101‑1 (MQ=25)                                                          ttCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGGCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCCGTCCCCCAGACTTTCg                                        >  1:2053905/1‑101 (MQ=21)                                                           tCCTTGG.AAAAATACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatcttca                                          >  2:3659601/1‑91 (MQ=0)                                                              ctggaaaaaaTCCG.GGGGGGGGGGGGGGGGGCGGTCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGAcc                                     <  1:3123620/95‑1 (MQ=25)                                                                gg.CAAAATACG.CCGGGGGGTGCGGGGGGCAGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCg                                  >  1:4528715/1‑101 (MQ=255)                                                                      aaTACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGATCAGTCCCCGAGACTTTCACCCTCGAACCg                             >  2:1088520/1‑101 (MQ=25)                                                                        tACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGCCGCCCCGGCCT..GGCGGGGCGAAAACCCCCGCTCAGTCCCCGAGACTTTCGACCTCGAACCggg                           >  1:3081407/1‑101 (MQ=37)                                                                                 ggggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAcgc                   >  1:596885/1‑101 (MQ=255)                                                                                  gggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAcgcg                  >  1:1300790/1‑101 (MQ=255)                                                                                    gTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGCCGCCGa                >  2:952220/1‑101 (MQ=255)                                                                                      gCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATg              >  1:1771106/1‑101 (MQ=255)                                                                                      gCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATg              <  1:199170/101‑1 (MQ=255)                                                                                      gCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCACAGAATTTCGACCTCGAACCGGGGCAGACGCGGATg              >  2:602670/1‑101 (MQ=255)                                                                                       cGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAATCCCAGAGACTTTCGACCTCGCACCCGGCCCGACGCGGATgc             >  2:2518057/1‑101 (MQ=38)                                                                                        ggggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcg            >  1:3097920/1‑101 (MQ=255)                                                                                        ggggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcg            >  2:3504661/1‑101 (MQ=255)                                                                                        ggggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcg            >  2:3420874/1‑101 (MQ=255)                                                                                        ggggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGCGGATgcg            >  1:1270322/1‑101 (MQ=255)                                                                                         gggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcgc           >  2:3386575/1‑101 (MQ=255)                                                                                         gggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGCGGATgcgc           >  2:392222/1‑101 (MQ=255)                                                                                            ggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAgg        <  1:333612/101‑1 (MQ=255)                                                                                            ggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAgg        >  1:2403843/1‑101 (MQ=255)                                                                                             gCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGc       >  2:3670598/1‑101 (MQ=255)                                                                                              cGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCg      >  1:3492674/1‑101 (MQ=255)                                                                                               ggccccccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCgg     <  1:2518231/97‑1 (MQ=255)                                                                                               ggAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCgg     >  2:3372982/1‑101 (MQ=255)                                                                                               ggAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCgg     >  1:2275589/1‑101 (MQ=255)                                                                                                gAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCggg    >  2:3109753/1‑101 (MQ=255)                                                                                                gAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCggg    >  2:1258319/1‑101 (MQ=255)                                                                                                gAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCggg    >  1:143844/1‑101 (MQ=255)                                                                                                 aGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGc   >  2:3306607/1‑101 (MQ=255)                                                                                                 aGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGc   >  2:4376988/1‑101 (MQ=255)                                                                                                  gCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGTGcc  >  1:722063/1‑101 (MQ=255)                                                                                                  gCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCCCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGCGGATGGGCAGGCGGGcc  >  1:884355/1‑101 (MQ=255)                                                                                                    |                                                                                                      AAGGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCC  >  NC_014034/2995541‑2995736 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 21 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG