New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	900803 =	29 (0.130)	34 (0.160)	13/194	26.0	0.47	intergenic (‑132/‑155)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
	?	NC_014034	= 2995638	49 (0.220)					intergenic (+178/+42)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

CTTGGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGG..................................................................................................  <  NC_014034/900905‑900803 ....................................................................................................GGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTT  <  NC_014034/2995638‑2995541                                                                                                                                                                                                                CGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGC                                                                                                 <  1:1261105/101‑1 (MQ=11)      CGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGC                                                                                                 <  2:311266/101‑1 (MQ=11)       GCCGCCTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCGGGCAGGGCCGGGGCGACCCGCGGGGGCT                                                                                                <  2:2785124/101‑1 (MQ=9)       GCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCT                                                                                                <  2:131683/101‑1 (MQ=31)       GCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCT                                                                                                <  1:3183960/101‑1 (MQ=31)       GCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCT                                                                                                <  1:2888118/101‑1 (MQ=31)         CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGggcc                                                                                              >  1:2390168/1‑97 (MQ=14)         CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCC                                                                                              <  2:4348151/101‑1 (MQ=33)          GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG                                                                                             <  2:1785545/101‑1 (MQ=34)          GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG                                                                                             <  1:1673086/101‑1 (MQ=34)            CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGTCCGGGGCGACCCGCGGGGGCTCCGCC                                                                                           <  2:1894570/101‑1 (MQ=21)              CTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCC                                                                                         <  2:2358731/101‑1 (MQ=34)               TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCC                                                                                        <  1:2723130/101‑1 (MQ=35)               TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCC                                                                                        <  1:1516632/101‑1 (MQ=35)                AGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCC                                                                                       >  2:530946/1‑101 (MQ=37)                AGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCCCCGCCCCCg                                                                                       >  2:1994425/1‑100 (MQ=25)                AGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGCGCTCCGCCCCCg                                                                                       >  1:1380708/1‑100 (MQ=25)                 GCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCgc                                                                                      <  2:711730/101‑3 (MQ=25)                  CCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCgca                                                                                     <  2:2967044/101‑4 (MQ=25)                   CCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCgcac                                                                                    <  1:3111729/101‑5 (MQ=25)                    CAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACC                                                                                  <  2:2135497/101‑1 (MQ=25)                      AGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCC                                                                                <  1:3158349/101‑1 (MQ=25)                      AGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCC                                                                                <  2:2370233/101‑1 (MQ=25)                      AGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCC                                                                                <  2:2558419/101‑1 (MQ=25)                       GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                               <  1:301931/101‑1 (MQ=25)                       GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                               <  2:4160632/101‑1 (MQ=25)                       GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                               <  1:4021606/101‑1 (MQ=25)                       GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                               <  1:4273799/101‑1 (MQ=25)                       GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                               <  1:474878/101‑1 (MQ=25)                       GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                               <  1:57469/101‑1 (MQ=25)                        TTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGCGGCTCCG.CCCCCGCACCCCCg                                                                              <  1:2540191/101‑2 (MQ=255)                          GCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGG                                                                            <  2:3332226/101‑1 (MQ=255)                           CCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGC                                                                           <  2:2702697/101‑1 (MQ=255)                                    ACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTTgca                                                                  <  1:380081/101‑4 (MQ=255)                                                                                                                                                                                                           CTTGGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGG..................................................................................................  <  NC_014034/900905‑900803 ....................................................................................................GGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTT  <  NC_014034/2995638‑2995541 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 38 ≤  ATCG