New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	900803 =	29 (0.130)	34 (0.160)	13/194	26.0	0.47	intergenic (‑132/‑155)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
	?	NC_014034	= 2995638	49 (0.220)					intergenic (+178/+42)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

GCCAAGGAAAACCCCTT.CGGTTGCCGCCCCGCAACCC.GTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGA  >  NC_014034/2995538‑2995738                                                                                                        |                                                                                                     gCCAA.GAAACCCCCCT.CGGTTCCCCCCCCCCCACCCGGCCGGCGCCCCGGCCCCCTTTTTTTCCTGGAAAAAATCCGCC.GGGGGGTGCGGGGGGCGGAGcc                                                                                                      <  1:795608/101‑1 (MQ=9)    aaGGAAAACCCCTT.CGGTTGCCGCCCCGCAACCC.GTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACGCC.GGGGGGTGCGGGGGGCGGAGccccc                                                                                                   <  2:2155608/101‑1 (MQ=255)    aaGGAAAACCCCTT.CGGTTGCCGCCCCGCAACCC.GTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACGCC.GGGGGGTGCGGGGGGCGGAGccccc                                                                                                   >  2:1169034/1‑101 (MQ=255)      gaaaacCCCCTT.CGGTGCCCCCCCCGCACCCC.GTCGGCGCCCCGGCCCCCTGCTTTCCCTTGGAAAAATACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCcg                                                                                                 <  2:100877/99‑1 (MQ=17)        aaacCCCCTTCCGGTCCCCCCCCCGCCCCCC.GGGGGC.GCCCCGCCCCCTTTTTTTCCTTGGAAAAAACCCCCGGGGGGGTGGGGGGGGCGGAGCCCCCcgc                                                                                                <  2:909287/101‑1 (MQ=2)            ccccTT.CGGTTGCCGCCCCGCAACCC.GTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACGCC.AGGGGGTGTGGGGGGCGGAGTCCCCCCCGGGTc                                                                                           >  1:4263590/1‑101 (MQ=25)                       tGCCGCCCCGCACCCG.GTGGGCGTCCAACCCTCTTGCTTTTCCTTGCCAAAATGCGCG.GGGGGGTGGGGAGGGAGGAGCCCCCGGCGGGTCGCCCCGGCtt                                                                                 <  2:598116/101‑1 (MQ=255)                         ccgccCCGCAACCC.GTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGc                                                                               >  2:1418634/1‑101 (MQ=255)                             cccGCACCCC.GTGGGCGCCCCAGCCCCGTTTTTTTCCTTGAAAAAATGCGCG.GGGGGGGGGGGGGGGCGGCCCCCCCCGCGGGTCGCCCCGGCTTGCCggg                                                                           <  1:1348005/101‑1 (MQ=255)                                           ggcggcCCAGCGCCCTGCTTTTCCTTGGCAAAATACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGCTTGCCGGGGCGAAATcccccc                                                              >  1:1519837/1‑100 (MQ=255)                                            gcgccCCGGCGCCCTGCTTTTCCTTGGCAAAATACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGc                                                             <  2:2259699/101‑1 (MQ=255)                                             cggcCCAGCGCCCTGCTTTTCCTTGGCAAAATACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATACCCCGCt                                                            >  2:3384581/1‑101 (MQ=255)                                               gcCCAGCGCCCTGCTTTTCCTTGGCAAAATACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGCCGCCCCGGCTTCCCGGGGCGCAATcccccccccc                                                          >  1:882023/1‑96 (MQ=18)                                                       cccTGCTTTTCCTTGGCAAAATACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCaga                                                  >  2:4212832/1‑101 (MQ=255)                                                               ttCCTTGGCAAAATACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCg                                          >  1:3621827/1‑101 (MQ=255)                                                                         aaaTACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAAcc                                >  2:3003825/1‑101 (MQ=255)                                                                          aaTACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCg                               >  1:4406522/1‑101 (MQ=255)                                                                               gCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCa                          >  2:40385/1‑101 (MQ=255)                                                                                gcgggggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCa                          <  2:680007/98‑1 (MQ=255)                                                                                 ggggggggGGGGGGGGGGGGCCCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAg                         <  1:4208950/99‑1 (MQ=38)                                                                                   ggggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAc                       >  1:2674561/1‑101 (MQ=255)                                                                                   ggggggGGGGGGGGGGGCCCCCCCCCGAGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAc                       <  1:1330159/101‑1 (MQ=255)                                                                                    gggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAcg                      >  1:4322396/1‑101 (MQ=255)                                                                                    gggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGAcg                      >  1:2139038/1‑101 (MQ=255)                                                                                    gggggTGCGGGGGGCGGAGCCCCCCGAGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAca                      >  2:1330062/1‑100 (MQ=255)                                                                                     ggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAcgc                     >  1:3516245/1‑101 (MQ=255)                                                                                      gggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAcgcg                    >  1:954777/1‑101 (MQ=255)                                                                                       ggTGCGGGGGGCGGAGCCGCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATACCCCGCACAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAcgctg                   >  2:4428404/1‑99 (MQ=255)                                                                                       ggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCgg                   >  2:1276816/1‑101 (MQ=255)                                                                                          gCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGCCGCGGATg                >  1:402811/1‑101 (MQ=255)                                                                                           cGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGCGGATgc               >  2:831234/1‑101 (MQ=255)                                                                                           cGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGCGGATgc               >  1:4257254/1‑101 (MQ=255)                                                                                            ggggggCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGGGAAATCCCCCGCTCAGTCCCCGAGACTTTCGGCCTCGAACCGGGTCAGACGCGGATgcg              >  2:3806182/1‑101 (MQ=255)                                                                                            ggggggCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGCTgcg              >  2:575931/1‑101 (MQ=255)                                                                                            ggggggCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcg              >  1:21334/1‑101 (MQ=255)                                                                                            ggggggCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcg              >  1:1697310/1‑101 (MQ=255)                                                                                            ggggggCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGCGGATgcg              >  2:3806183/1‑101 (MQ=255)                                                                                            ggggggCGGAGCACCCCGCGGGTCGCCCCGGCTTTCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGAGgcg              >  2:699873/1‑101 (MQ=255)                                                                                             gggggCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcgc             >  1:470004/1‑101 (MQ=255)                                                                                              ggggCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGCCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCa            >  1:2075149/1‑101 (MQ=255)                                                                                               gggcccccccccccGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAg           <  2:4322127/93‑1 (MQ=255)                                                                                               gggCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGCCCCAGAGACTTTCGACCTCGAACCGGGTCCGACGCGGATGCGCAg           >  1:2299655/1‑101 (MQ=255)                                                                                                 gCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGc         >  2:4000223/1‑101 (MQ=255)                                                                                                 gCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGc         >  1:104894/1‑101 (MQ=255)                                                                                                  cGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAAGCGGATGCGCAGGCg        >  1:4222601/1‑101 (MQ=255)                                                                                                  cGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGCCAGACGCGGATGCGCAGGCg        >  1:1809237/1‑101 (MQ=255)                                                                                                   ggAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCgg       >  1:449166/1‑101 (MQ=255)                                                                                                   ggAGCCCCCCGCGGGCCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTGCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCgg       >  1:3754523/1‑101 (MQ=255)                                                                                                     aGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGc     >  2:1418416/1‑101 (MQ=255)                                                                                                       ccccccGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCg   >  2:1304199/1‑101 (MQ=255)                                                                                                       ccccccGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCg   >  2:989457/1‑101 (MQ=255)                                                                                                        cccccGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGa  >  2:1329479/1‑101 (MQ=255)                                                                                                        |                                                                                                     GCCAAGGAAAACCCCTT.CGGTTGCCGCCCCGCAACCC.GTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACGCC.GGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGCTTGCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGA  >  NC_014034/2995538‑2995738 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 39 ≤  ATCG