New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	900803 =	29 (0.130)	34 (0.160)	13/194	26.0	0.47	intergenic (‑132/‑155)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
	?	NC_014034	= 2995638	49 (0.220)					intergenic (+178/+42)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

AACCCCGTTTCCG.CGCGG.CGCCGCTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GC...CGCGGA..G.....CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCG  >  NC_014034/900725‑900900                                                                                               |                                                                                                  acccccGTTCCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCg                                                                                    <  1:1386333/99‑1 (MQ=12)  aCCCCGTTTCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCgg                                                                                   >  1:52468/1‑101 (MQ=16)         ttCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGccccagatcggaa                                                                            >  2:2033036/1‑92 (MQ=12)            cgccgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCGGGGGGTGGGGG...GGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCggg                                                                         <  1:3711040/98‑1 (MQ=12)               cgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCg                                                                      >  2:2532543/1‑101 (MQ=18)               cgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCg                                                                      >  2:1380611/1‑101 (MQ=18)                  ggccgccgcTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGaaa                                                                   >  1:825051/4‑101 (MQ=18)                  ggccgccgcTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGaaa                                                                   >  1:530998/4‑101 (MQ=18)                   gccgccgcTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAg                                                                  >  2:242516/3‑101 (MQ=18)                       ccccTTCGCCGCACCCCCGGTTTTCCTG.GGTGCAAAGCCGCCGGGGGGT...GC...GGGGGC..GGCCCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGcccc                                                              <  1:3515912/98‑1 (MQ=9)                        ccttttGCCCCAGCCCCGGTTTTCCTT.GGGGAAAAGCCGCCGGGGGGG...GCGGGGGCGGACCC.....CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGccccc                                                             <  2:1843460/98‑1 (MQ=2)                         gcTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCcg                                                            >  1:3673428/1‑101 (MQ=18)                           tttGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGG...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCCGCCCTGGCGGGGCGAAAGCCCCcccg                                                          >  2:389094/1‑101 (MQ=16)                            ttGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCcgcgc                                                         >  2:3370766/1‑101 (MQ=18)                            tggCCGCAGCCCCGGTTTCCCTG.GGTGCAAACGCGCCGGGGGGT...GG...GGGGGG..GGCCCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCcgcgc                                                         <  1:4217616/99‑1 (MQ=9)                              gCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCgcgcgc                                                       >  2:2390018/1‑101 (MQ=18)                               ccGCCGCCCC.GTTTTCCTTGGGTGCAAATCCGCCGGGGGGG...GCGGGGGCGGACCC.....CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGcgcc                                                      <  1:2532706/101‑1 (MQ=2)                                ccgcgCCCCGTTTGTCCGT.GGCACAAATACGCCCGGGGGC...GCGGGGGCGGT..GCC...CCCCCGGCTCGCCCCGGCCCTGCCAGGGCGAAAGCCCCCGCGcgccg                                                     <  2:4052051/97‑1 (MQ=255)                                cGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGcgccg                                                     >  1:3153953/1‑101 (MQ=18)                                   aGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCgg                                                  >  1:1520120/1‑101 (MQ=18)                                     ccccGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGcc                                                >  1:1882378/1‑101 (MQ=18)                                         ggTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCTCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGc                                            >  1:2005599/1‑101 (MQ=18)                                          gTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCa                                           >  2:1260143/1‑101 (MQ=18)                                            tttCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCaaa                                         >  1:741605/1‑101 (MQ=18)                                             ttCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCaaaa                                        >  1:720277/1‑101 (MQ=18)                                              tCCTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAg                                       >  1:2216078/1‑101 (MQ=18)                                                cTT.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCCCGCGCCGCGGCCCGGCAAAAGct                                     >  1:4276648/1‑101 (MQ=18)                                                  tgggTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGctc                                    <  1:2758041/99‑1 (MQ=18)                                                  t.GGTGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGctct                                   >  1:2517135/1‑101 (MQ=18)                                                      tGCAAATACGCCCGGGGGT...GCGGGGGCGGA..GCC...CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGt                                >  1:380081/1‑101 (MQ=18)                                                                                      ggcggagcccccGCGGGTCGCCCCGGACCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTagag        >  2:1894570/10‑101 (MQ=38)                                                                                        cggagcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTc      >  2:1785545/8‑101 (MQ=255)                                                                                        cggagcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTc      >  1:1673086/8‑101 (MQ=255)                                                                                         ggcccccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCg     <  1:2390168/95‑1 (MQ=255)                                                                                         ggagcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCg     >  2:4348151/7‑101 (MQ=255)                                                                                           agcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGgc   >  2:131683/5‑101 (MQ=255)                                                                                           agcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGgc   >  1:3183960/5‑101 (MQ=255)                                                                                           agcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGgc   >  1:2888118/5‑101 (MQ=255)                                                                                           agcccccGCGGGTCGCCCCGGCCCTGCCCGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGGCGgc   >  2:2785124/5‑101 (MQ=255)                                                                                            gcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGgcg  >  2:311266/4‑101 (MQ=255)                                                                                            gcccccGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGgcg  >  1:1261105/4‑101 (MQ=255)                                                                                               |                                                                                                  AACCCCGTTTCCG.CGCGG.CGCCGCTTTGCCGCAGCCCCGGTTTTCCTT.GGTGCAAATACGCCCGGGGGT...GC...CGCGGA..G.....CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCG  >  NC_014034/900725‑900900 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG