New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 392494	72 (0.420)	10 (0.060)	9/150	24.1	0.21	intergenic (‑142/+1)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	= 1699935	5 (0.020)					intergenic (+8/+35)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

ATCTTGCCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGCCCGAC  >  NC_014034/392422‑392594                                                                            |                                                                                                        atcgtccccaaaaTACCCGGGGGGCCGGGGGGCGGGCCCCCC..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATcc                                                                          <  2:2169086/91‑1 (MQ=21)     tGCCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC..GGCGGGGGGCCCCCGCGCCGGCC.GCGCGGAAACACCTGTCG.AACCTCC.CCCCC.ACAACCCgcc                                                                      >  2:2886642/1‑101 (MQ=2)     tGCCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC..GGCGGGGCGGCCCCGCGCCGCCGCGGGGGAAAACCCTTCCCGCAACTTCC.CCCCC.aacccagc                                                                        >  2:2883971/1‑95 (MQ=2)             aaaccccGGGGGGCCGGGGGGGGGGCCCCCCGGGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGt                                                                <  2:633986/97‑1 (MQ=25)               atCCCGGGGGTCCGGGGGCGGAGCCCCC..GGCGGGGTGGCCCGGCGCCGCCG.CGGGGGAAAAACCTCACG.AAACTCT.CCCACAAAAACCGCccgccgccccc                                                             >  2:1290965/1‑96 (MQ=2)               accccGGGGGGCGGGGGGGGGGGCCCCCCGGGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTcc                                                              <  2:3204613/99‑1 (MQ=25)                tCCCGGGGGTCCGGGGGCGGAGCCCCC..GGCGGGGGGCCCCGGGGCGGCCC.CGGGGGAAACAAATGCCG.AAATTCTCCCCCC.AAACCCGCCCCCCGGCcccc                                                            >  1:224692/1‑100 (MQ=2)                  gggggggGCGGGGGGGGGCCCCCCGG.GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCcgcg                                                          <  1:705137/99‑1 (MQ=25)                     ggggTCCGGGGGCGGAGCCCCC..GGCGGGGGGCCTCCGCGCAGGCC.CGCGGGAAACACTTGCCC.CACCCCT.CCCCC.AAAACCCGCCCCCCGGCCcgccccca                                                      >  2:3856438/1‑96 (MQ=9)                             gggggggccccccc..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGc                                              <  2:3579922/92‑1 (MQ=255)                             ggggCGGAGCCCCC..GGCGGGGCGCCTCCGCGCCGCCC.CGGCGGAAACACATCCCC.CACTTCT.TCCCC.CAACACCCCCCCCGGCCCCGCGCCCAAACTTCGc                                              >  2:2568836/1‑101 (MQ=255)                               gggggccccccg..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGctc                                            <  1:2128352/94‑1 (MQ=255)                                 cGGAGCCCCC..GGCGGGGCGCCCCGGCGCCGCCC.GGGCGGAAACACTTTCCG.AACTTCT.CCCCC.AAATCCCCCCCCCCGGCCCCCGCCCCAGCTTCGccctc                                          >  2:4445110/1‑100 (MQ=255)                                      ccccg..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTc                                     <  2:2749518/101‑1 (MQ=255)                                       cccc..GGCGGGCCCCCTCGGCGCAGCCG.AGGCGATATCTCTTGCCG.AACTTCC.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcg                                    <  1:3814161/101‑1 (MQ=38)                                         gccgggcggGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcg                                    <  1:4402449/97‑1 (MQ=255)                                              gcggGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCgccgcc                               <  1:4136366/101‑1 (MQ=255)                                               cggGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCa                              >  2:79472/1‑101 (MQ=255)                                                gggTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAt                             >  1:3637505/1‑101 (MQ=255)                                                 ggTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAtt                            >  2:3696878/1‑101 (MQ=255)                                                   tccccTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCg                          <  2:191984/98‑1 (MQ=255)                                                    cGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCCTTCgg                         >  2:790085/1‑101 (MQ=255)                                                    cGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCgg                         <  1:523437/101‑1 (MQ=255)                                                    cGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCgg                         >  2:814937/1‑101 (MQ=255)                                                     gCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGc                        >  1:2121357/1‑101 (MQ=255)                                                       cTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGa                      >  1:2810835/1‑101 (MQ=255)                                                       cTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGa                      >  2:3930469/1‑101 (MQ=255)                                                        tCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGAt                     >  1:1744115/1‑101 (MQ=255)                                                        tCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGAt                     >  2:2312208/1‑101 (MQ=255)                                                        tCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGAt                     <  2:664583/101‑1 (MQ=255)                                                        ccGGCGCAGCCG.AGGCGAAATCCCTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGAt                     <  1:1943101/100‑1 (MQ=255)                                                         cGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGAtc                    >  1:1535598/1‑101 (MQ=255)                                                          ggCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGAtct                   >  1:3201402/1‑101 (MQ=255)                                                          ggCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGAtct                   <  1:2731675/101‑1 (MQ=255)                                                          ggCCCACCCG.AGACGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGAtct                   <  2:4396651/101‑1 (MQ=255)                                                           gcgcAGCCG.AGGCGAAATCACTTGCCG.AACGTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGAtctt                  <  1:4053783/101‑1 (MQ=255)                                                            ggcAGCCG.AGGCGAAATCCCTCGCCG.ACCTTCC.CCCCC.AAACCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGAtcttc                 <  1:3930723/100‑1 (MQ=255)                                                            cgcAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCAAtcttc                 <  2:179861/101‑1 (MQ=255)                                                             gcAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGAtcttct                >  2:3185986/1‑101 (MQ=255)                                                              cAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATcttctt               <  2:2736339/101‑1 (MQ=255)                                                              cAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATcttctt               >  2:860412/1‑101 (MQ=255)                                                                gCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTtgt             <  2:2451159/101‑1 (MQ=255)                                                                gCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTtgt             >  1:4223557/1‑101 (MQ=255)                                                                 ccG.AGGCGAAATCACTTGCCG.ACCTTCT.CCCCC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTtgtg            <  2:360243/101‑1 (MQ=255)                                                                 ccG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTtgtg            >  1:695865/1‑101 (MQ=255)                                                                 ccG.AGGCGAAATCACTGGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTtgtg            <  2:422583/101‑1 (MQ=255)                                                                  cG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGa           >  1:671056/1‑101 (MQ=255)                                                                  cG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGa           >  2:2414382/1‑101 (MQ=255)                                                                  cG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGa           >  1:2436301/1‑101 (MQ=255)                                                                  cG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGa           >  1:2701405/1‑101 (MQ=255)                                                                  cG.AGCCGAAATCCCTTGCCG.AACTCCC.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGa           <  1:3856691/101‑1 (MQ=255)                                                                   g.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGAt          >  1:2389753/1‑101 (MQ=255)                                                                   g.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGAt          >  1:2642731/1‑101 (MQ=255)                                                                   g.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGAt          >  2:3399894/1‑101 (MQ=255)                                                                   g.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGAt          >  2:1292515/1‑101 (MQ=255)                                                                     aGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGAtt         >  2:3236246/1‑101 (MQ=255)                                                                     aGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGAtt         >  2:3515081/1‑101 (MQ=255)                                                                     aGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGAtt         >  1:334884/1‑101 (MQ=255)                                                                     aGGCGAAATAACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGAtt         >  1:3117876/1‑101 (MQ=255)                                                                        cGAAATCCCTTGCCG.AACTTCC.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGcc      <  1:319139/101‑1 (MQ=255)                                                                        cGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGcc      >  2:3533905/1‑101 (MQ=255)                                                                         gAAATCCCTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGccc     <  2:3116337/101‑1 (MQ=255)                                                                         gAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGccc     >  1:3080289/1‑101 (MQ=255)                                                                         gAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGccc     <  1:3697131/101‑1 (MQ=255)                                                                         gAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGccc     >  1:4202771/1‑101 (MQ=255)                                                                         gAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGccc     >  1:646558/1‑101 (MQ=255)                                                                          aaaTCCCTTGCCG.AACTTCT.CCCCA.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGCCCg    <  1:1291058/101‑1 (MQ=255)                                                                          aaaTCACTTTCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGCCCg    >  2:2293590/1‑101 (MQ=255)                                                                          aaaTCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGcccc    >  1:1396837/1‑100 (MQ=255)                                                                          aaaTCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGCCCg    >  1:3112774/1‑101 (MQ=255)                                                                          aaaTCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGCCCg    >  1:1606752/1‑101 (MQ=255)                                                                           aaTCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGCCCGa   >  2:1008678/1‑101 (MQ=255)                                                                            aTCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGCCCGAc  >  2:282414/1‑101 (MQ=255)                                                                            |                                                                                                        ATCTTGCCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCATTCGGCGATCTTCTTGTGATTGCCCGAC  >  NC_014034/392422‑392594 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG