New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 392494	72 (0.420)	10 (0.060)	9/150	24.1	0.21	intergenic (‑142/+1)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	= 1699935	5 (0.020)					intergenic (+8/+35)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

CGAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCG  >  NC_014034/1699837‑1700027                                                                                                   |                                                                                             cGAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGtt                                                                                            <  2:1662391/101‑1 (MQ=255)  gggggcgggCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGttt                                                                                           <  2:2893331/94‑1 (MQ=255)  gAGCGCTGGCATTTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGttt                                                                                           <  2:1703209/101‑1 (MQ=255)   ggcgcTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTc                                                                                          <  2:3795903/100‑1 (MQ=255)   ggcccTGGCATCTGGTGCTGTTGCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTc                                                                                          <  2:3185306/97‑1 (MQ=255)    gcgcTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCg                                                                                         <  2:2324182/101‑1 (MQ=255)       cTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCt                                                                                      >  2:1054613/1‑101 (MQ=255)        tGGCATCTGGTGCTTTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTc                                                                                     <  2:2599824/101‑1 (MQ=255)        tGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTc                                                                                     >  2:1331690/1‑101 (MQ=255)         ggCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCg                                                                                    >  1:3561444/1‑101 (MQ=255)         ggCATCTGGGGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCg                                                                                    <  2:1118501/101‑1 (MQ=255)          gCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCgg                                                                                   >  1:3464395/1‑101 (MQ=255)            atttGGTGCTGTTCCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCt                                                                                 <  2:4112530/98‑1 (MQ=255)             tCTGGTGCTGTTCCCCTGGAGGGAGCCGCCGATCTCGGCGCACCTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTg                                                                                <  2:2221949/101‑1 (MQ=255)              gtGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTgc                                                                               <  2:2239135/100‑1 (MQ=255)              cTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTgc                                                                               >  1:1139436/1‑101 (MQ=255)                 gTGCTTTTTCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGcc                                                                            <  2:2549642/101‑1 (MQ=255)                 gTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGGGcc                                                                            >  1:2265883/1‑101 (MQ=255)                  tGCTGTTTCGCGGGGGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCg                                                                           <  1:1054701/101‑1 (MQ=255)                    ttGTTTCGCGGGAGGGACCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAg                                                                         <  2:1643866/100‑1 (MQ=255)                    cTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCgcg                                                                         >  1:3026027/1‑99 (MQ=255)                    cTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAg                                                                         <  2:4342832/101‑1 (MQ=255)                     ttttccGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAgg                                                                        <  1:3880977/96‑1 (MQ=255)                     tGTTTCGGTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAgg                                                                        <  2:376805/101‑1 (MQ=255)                     tGTTTCGCTTGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAgg                                                                        >  2:1769871/1‑101 (MQ=255)                      ttttCGCGGGAGGGGGCCGCCGATCTCGGCGCATCTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGc                                                                       <  1:814848/100‑1 (MQ=255)                      gTTGCGGTGGGGGGGGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGc                                                                       <  2:1575955/101‑1 (MQ=255)                       tttctgtGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCAGCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGGTGCGCCGCGGCg                                                                      >  2:912924/7‑101 (MQ=255)                       tttCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCg                                                                      <  2:3703957/101‑1 (MQ=255)                        ttCGCTGGAGGGAGCCGCCGATCTCGGCTCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGa                                                                     <  2:518860/101‑1 (MQ=255)                           gcgggagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGaccc                                                                  <  1:3256440/98‑4 (MQ=255)                           gcgggagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGaccc                                                                  <  2:2646898/98‑4 (MQ=255)                            cgggggggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGacccg                                                                 <  1:656376/96‑5 (MQ=255)                             tGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGacccgc                                                                >  2:1997626/1‑96 (MQ=255)                                agggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCgccccgcccg                                                             >  2:4333289/1‑92 (MQ=255)                                  ggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGacccgcccggg                                                           >  2:2663589/1‑91 (MQ=255)                                               tcGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAAATACCCCCTCAGCCCTTCATCt                                              >  2:4069866/1‑101 (MQ=255)                                                                ccATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATc                             <  2:584049/101‑1 (MQ=255)                                                                       cAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAAATACCCCCTCAGGCCTTCATCTTGAAGCCCTTGCCGATCTGATCgg                      >  2:2056507/1‑101 (MQ=255)                                                                          ccTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGAT.AGATCGGaaga                  >  2:3875073/1‑98 (MQ=255)                                                                                           aGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCg  >  2:4386716/1‑101 (MQ=255)                                                                                                   |                                                                                             CGAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCG  >  NC_014034/1699837‑1700027 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG