Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_0543(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_0543
Module neighborhood information for RSP_0543
|Gene||Common Name||Description||Module membership|
|RSP_0187||RSP_0187||Dihydroorotate dehydrogenase (NCBI)||83, 244|
|RSP_0361||sda||probable L-serine dehydratase protein (NCBI)||150, 244|
|RSP_0498||hupC||Ni, Fe hydrogenase I cytochrome b subunit (NCBI)||244, 300|
|RSP_0542||RSP_0542||hypothetical protein (NCBI)||244, 300|
|RSP_0543||fixU||hypothetical protein (NCBI)||141, 244|
|RSP_0544||nifZ||probable NifZ (NCBI)||141, 354|
|RSP_0545||RSP_0545||hypothetical protein (NCBI)||141, 300|
|RSP_0634||RSP_0634||TRAP-T family transporter, DctM (12 TMs) subunit (NCBI)||17, 141|
|RSP_0635||RSP_0635||TRAP-T family transporter, DctQ (4 TMs) subunit (NCBI)||17, 141|
|RSP_0636||RSP_0636||TRAP-T family transporter, DctP (periplasmic binding) subunit (NCBI)||17, 141|
|RSP_0838||RSP_0838||putative DNA polymerase III, delta subunit / DNA binding (NCBI)||141, 342|
|RSP_0888||amtB||Ammonium transporter, AmtB (NCBI)||141, 183|
|RSP_1042||RSP_1042||hypothetical protein (NCBI)||141, 357|
|RSP_1433||RSP_1433||hypothetical protein (NCBI)||141, 285|
|RSP_1441||RSP_1441||regulatory protein, GntR family (NCBI)||89, 141|
|RSP_1458||RSP_1458||Putative DNA repair enzyme (NCBI)||244, 282|
|RSP_1473||RSP_1473||hypothetical protein (NCBI)||97, 244|
|RSP_1616||RSP_1616||hypothetical protein (NCBI)||141, 342|
|RSP_1652||RSP_1652||hypothetical protein (NCBI)||73, 141|
|RSP_1751||RSP_1751||putative 2Fe-2S ferredoxin protein (NCBI)||244, 300|
|RSP_2010||RSP_2010||hypothetical protein (NCBI)||141, 343|
|RSP_2056||RSP_2056||hypothetical protein (NCBI)||244, 347|
|RSP_2123||RSP_2123||Radical SAM domain protein (NCBI)||73, 244|
|RSP_2553||RSP_2553||hypothetical protein (NCBI)||141, 157|
|RSP_2677||RSP_2677||Putative Mg++ transport associated protein, MgtC (NCBI)||138, 141|
|RSP_2756||RSP_2756||hypothetical protein (NCBI)||125, 141|
|RSP_2964||RSP_2964||hypothetical protein (NCBI)||229, 244|
|RSP_3025||RSP_3025||possible NAD(P)H oxidoreductase (NCBI)||141, 303|
|RSP_3036||RSP_3036||hypothetical protein (NCBI)||38, 141|
|RSP_3060||cysE||possible O-acetylserine synthase (NCBI)||141, 370|
|RSP_3061||RSP_3061||hypothetical protein (NCBI)||38, 141|
|RSP_3062||fabG||3-oxoacyl-(acyl-carrier-protein) reductase (NCBI)||141, 370|
|RSP_3129||RSP_3129||serine/threonine protein kinase (NCBI)||244, 249|
|RSP_3130||RSP_3130||Putative serine protease (NCBI)||83, 244|
|RSP_3131||RSP_3131||ABC (antimicrobial peptide) transporter, ATPase subunit (NCBI)||244, 249|
|RSP_3132||RSP_3132||hypothetical protein (NCBI)||244, 249|
|RSP_3133||RSP_3133||hypothetical protein (NCBI)||244, 249|
|RSP_3134||RSP_3134||Serine/threonine protein kinase (NCBI)||244, 249|
|RSP_3135||RSP_3135||ppkA-related protein (NCBI)||244, 292|
|RSP_3137||RSP_3137||hypothetical protein (NCBI)||141, 168|
|RSP_3188||RSP_3188||ApbE family protein (NCBI)||244, 300|
|RSP_3190||RSP_3190||2Fe-2S ferredoxin (NCBI)||68, 244|
|RSP_3191||fprA||Flavodoxin (NCBI)||244, 300|
|RSP_3199||RSP_3199||hypothetical protein (NCBI)||244, 300|
|RSP_3211||cbiO||ABC cobalt transporter, ATPase subunit, CbiO (NCBI)||23, 244|
|RSP_3335||RSP_3335||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3336||RSP_3336||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3404||RSP_3404||hypothetical protein (NCBI)||95, 244|
|RSP_3405||gntR||transcriptional regulator, GntR family (NCBI)||95, 244|
|RSP_3443||RSP_3443||putative acetamidase/formamidase (NCBI)||61, 141|
|RSP_3628||RSP_3628||hypothetical protein (NCBI)||150, 244|
|RSP_3652||RSP_3652||Predicted phage phi-C31 gp36 major capsid-like protein (NCBI)||141, 233|
|RSP_3653||RSP_3653||hypothetical protein (NCBI)||141, 233|
|RSP_3663||RSP_3663||TRAP-T family transporter, small (4TMs) inner membrane subunit (NCBI)||141, 342|
|RSP_3786||RSP_3786||hypothetical protein (NCBI)||141, 236|
|RSP_3794||RSP_3794||hypothetical protein (NCBI)||29, 141|
|RSP_3797||RSP_3797||hypothetical protein (NCBI)||141, 157|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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