Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_2553(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_2553
|Gene||Common Name||Description||Module membership|
|RSP_0543||fixU||hypothetical protein (NCBI)||141, 244|
|RSP_0544||nifZ||probable NifZ (NCBI)||141, 354|
|RSP_0545||RSP_0545||hypothetical protein (NCBI)||141, 300|
|RSP_0581||RSP_0581||hypothetical protein (NCBI)||157, 163|
|RSP_0634||RSP_0634||TRAP-T family transporter, DctM (12 TMs) subunit (NCBI)||17, 141|
|RSP_0635||RSP_0635||TRAP-T family transporter, DctQ (4 TMs) subunit (NCBI)||17, 141|
|RSP_0636||RSP_0636||TRAP-T family transporter, DctP (periplasmic binding) subunit (NCBI)||17, 141|
|RSP_0813||RSP_0813||Response regulator receiver protein (NCBI)||29, 157|
|RSP_0838||RSP_0838||putative DNA polymerase III, delta subunit / DNA binding (NCBI)||141, 342|
|RSP_0888||amtB||Ammonium transporter, AmtB (NCBI)||141, 183|
|RSP_1042||RSP_1042||hypothetical protein (NCBI)||141, 357|
|RSP_1213||RSP_1213||hypothetical protein (NCBI)||157, 293|
|RSP_1393||thiQ||ABC thiamine transporter, ATPase subunit (NCBI)||31, 157|
|RSP_1432||RSP_1432||hypothetical protein (NCBI)||94, 157|
|RSP_1433||RSP_1433||hypothetical protein (NCBI)||141, 285|
|RSP_1441||RSP_1441||regulatory protein, GntR family (NCBI)||89, 141|
|RSP_1527||RSP_1527||Helicase, UvrD/Rep family (NCBI)||110, 157|
|RSP_1616||RSP_1616||hypothetical protein (NCBI)||141, 342|
|RSP_1652||RSP_1652||hypothetical protein (NCBI)||73, 141|
|RSP_2010||RSP_2010||hypothetical protein (NCBI)||141, 343|
|RSP_2553||RSP_2553||hypothetical protein (NCBI)||141, 157|
|RSP_2555||RSP_2555||hypothetical protein (NCBI)||77, 157|
|RSP_2556||RSP_2556||hypothetical protein (NCBI)||77, 157|
|RSP_2557||asnB||putative asparagine synthetase (NCBI)||157, 323|
|RSP_2558||RSP_2558||hypothetical protein (NCBI)||157, 316|
|RSP_2588||RSP_2588||hypothetical protein (NCBI)||157, 363|
|RSP_2677||RSP_2677||Putative Mg++ transport associated protein, MgtC (NCBI)||138, 141|
|RSP_2756||RSP_2756||hypothetical protein (NCBI)||125, 141|
|RSP_3025||RSP_3025||possible NAD(P)H oxidoreductase (NCBI)||141, 303|
|RSP_3029||RSP_3029||transcriptional regulator, GntR family (NCBI)||97, 157|
|RSP_3031||RSP_3031||ABC peptide/opine transporter, inner membrane subunit (NCBI)||97, 157|
|RSP_3036||RSP_3036||hypothetical protein (NCBI)||38, 141|
|RSP_3060||cysE||possible O-acetylserine synthase (NCBI)||141, 370|
|RSP_3061||RSP_3061||hypothetical protein (NCBI)||38, 141|
|RSP_3062||fabG||3-oxoacyl-(acyl-carrier-protein) reductase (NCBI)||141, 370|
|RSP_3085||RSP_3085||Conserved hypothetical membrane protein (NCBI)||157, 176|
|RSP_3137||RSP_3137||hypothetical protein (NCBI)||141, 168|
|RSP_3253||RSP_3253||Predicted acetamidase / formamidase (NCBI)||157, 245|
|RSP_3255||RSP_3255||ABC peptide transporter, periplasmic binding protein (NCBI)||157, 245|
|RSP_3335||RSP_3335||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3336||RSP_3336||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3443||RSP_3443||putative acetamidase/formamidase (NCBI)||61, 141|
|RSP_3652||RSP_3652||Predicted phage phi-C31 gp36 major capsid-like protein (NCBI)||141, 233|
|RSP_3653||RSP_3653||hypothetical protein (NCBI)||141, 233|
|RSP_3655||RSP_3655||Dihydrodipicolinate synthase/N-acetylneuraminate lyase (NCBI)||105, 157|
|RSP_3663||RSP_3663||TRAP-T family transporter, small (4TMs) inner membrane subunit (NCBI)||141, 342|
|RSP_3700||RSP_3700||transcriptional regulator, LacI family (NCBI)||157, 251|
|RSP_3701||RSP_3701||ABC sugar transporter, periplasmic binding protein (NCBI)||157, 251|
|RSP_3702||RSP_3702||ABC sugar transporter, ATPase subunit (NCBI)||157, 251|
|RSP_3703||RSP_3703||ABC sugar transporter, inner membrane subunit (NCBI)||157, 251|
|RSP_3704||RSP_3704||ribitol 2-dehydrogenase (NCBI)||157, 251|
|RSP_3705||RSP_3705||D-ribulokinase (NCBI)||157, 251|
|RSP_3786||RSP_3786||hypothetical protein (NCBI)||141, 236|
|RSP_3794||RSP_3794||hypothetical protein (NCBI)||29, 141|
|RSP_3797||RSP_3797||hypothetical protein (NCBI)||141, 157|
|RSP_3805||RSP_3805||possible integrase (NCBI)||157, 285|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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