Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Prolyl-tRNA synthetase, class IIa (NCBI)
Functional Annotations (6)
|Prolyl-tRNA synthetase||cog/ cog|
|proline-tRNA ligase activity||go/ molecular_function|
|ATP binding||go/ molecular_function|
|prolyl-tRNA aminoacylation||go/ biological_process|
|Aminoacyl-tRNA biosynthesis||kegg/ kegg pathway|
Regulation information for RSP_0778(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_0778
Module neighborhood information for RSP_0778
|Gene||Common Name||Description||Module membership|
|RSP_0005||guaA||GMP synthase (glutamine-hydrolyzing) (NCBI)||166, 258|
|RSP_0366||RSP_0366||Adenylosuccinate synthetase (NCBI)||192, 258|
|RSP_0385||RSP_0385||Threonyl-tRNA synthetase, class IIa (NCBI)||166, 360|
|RSP_0404||RSP_0404||fructose - 1,6 - bisphosphatase, GlpX-like (NCBI)||166, 203|
|RSP_0568||RSP_0568||Isoleucyl-tRNA synthetase, class Ia (NCBI)||15, 258|
|RSP_0778||ProS||Prolyl-tRNA synthetase, class IIa (NCBI)||166, 258|
|RSP_0815||aspS||Aspartyl-tRNA synthetase (NCBI)||166, 248|
|RSP_0827||RSP_0827||Ribosomal protein L25 (NCBI)||104, 166|
|RSP_0832||RSP_0832||Putative GTP-binding protein (NCBI)||166, 192|
|RSP_0859||leuB||hypothetical protein (NCBI)||121, 258|
|RSP_0968||mdh||malate dehydrogenase (RefSeq)||25, 166|
|RSP_1003||pyrC||Dihydroorotase and related cyclic amidohydrolases (NCBI)||224, 258|
|RSP_1212||argG||ArgG, Argininosuccinate synthase (NCBI)||109, 166|
|RSP_1221||rph||ribonuclease PH (NCBI)||192, 258|
|RSP_1222||ham1||putative Ham1p_like protein, Ham1 family (NCBI)||192, 258|
|RSP_1223||tdcF||Putative translation initiation inhibitor, yjgF family / putative Endoribonuclease L-PSP (NCBI)||7, 258|
|RSP_1350||serB||phosphoserine phosphatase (NCBI)||258, 279|
|RSP_1376||asd||putative aspartate-semialdehyde dehydrogenase (NCBI)||166, 192|
|RSP_1761||pheT||Phenylalanyl-tRNA synthetase beta chain (NCBI)||51, 166|
|RSP_1855||RSP_1855||hypothetical protein (NCBI)||160, 258|
|RSP_1856||glyQ||Heterodimeric glycyl-transfer RNA synthetase (NCBI)||109, 258|
|RSP_1857||RSP_1857||hypothetical protein (NCBI)||160, 258|
|RSP_1858||glyS||Glycyl-tRNA synthetase, beta subunit (NCBI)||160, 258|
|RSP_1874||carA||Carbamoyl-phosphate synthase, small chain (NCBI)||258, 263|
|RSP_1969||purM||Phosphoribosylformylglycinamidine cyclo-ligase (NCBI)||258, 372|
|RSP_1995||gltX||Glutamyl-tRNA synthetase (NCBI)||15, 258|
|RSP_2088||lepA||GTP-binding elongation factor (NCBI)||51, 166|
|RSP_2243||hisA||phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (NCBI)||160, 258|
|RSP_2270||gatA||Glutamyl-tRNA (Gln) amidotransferase, subunit A (NCBI)||258, 349|
|RSP_2307||RSP_2307||probable manganese-dependent inorganic pyrophosphatase (NCBI)||109, 166|
|RSP_2453||RSP_2453||putative oxidoreductase (NAD/NADP dependent) (NCBI)||71, 166|
|RSP_2461||fabG||3-oxoacyl-(acyl-carrier protein) reductase (NCBI)||166, 195|
|RSP_2537||prfC||Probable peptide chain release factor RF3 (NCBI)||72, 166|
|RSP_2697||RSP_2697||hypothetical protein (NCBI)||166, 184|
|RSP_2698||RSP_2698||putative quinoprotein (NCBI)||166, 240|
|RSP_2699||RSP_2699||Probable GTP-binding protein (NCBI)||166, 271|
|RSP_2737||RSP_2737||Putative ssRNA endoribonuclease L-PSP (NCBI)||166, 345|
|RSP_2804||tgt||Probable queuine tRNA ribosyltransferase (NCBI)||190, 258|
|RSP_2868||RSP_2868||Putative inosine-5'-monophosphate dehydrogenase (NCBI)||224, 258|
|RSP_2875||glk||putative glucokinase (NCBI)||160, 258|
|RSP_2918||RSP_2918||Predicted ferripyochelin binding protein (NCBI)||258, 263|
|RSP_2919||RSP_2919||Probable Guanylate kinase (NCBI)||258, 263|
|RSP_2920||RSP_2920||hypothetical protein (NCBI)||258, 263|
|RSP_2951||purL||FGAM synthase synthetase domain (NCBI)||203, 258|
|RSP_2956||tktA||Transketolase (NCBI)||166, 360|
|RSP_3349||RSP_3349||hypothetical protein (NCBI)||133, 166|
|RSP_3551||hisS||Histidyl-tRNA synthetase (NCBI)||160, 258|
|RSP_4041||tyrS||Tyrosyl-tRNA synthetase, class Ib (NCBI)||15, 258|
|RSP_4042||RSP_4042||Peptidyl-prolyl cis-trans isomerase, cyclophilin type (NCBI)||166, 345|
|RSP_4043||RSP_4043||Peptidylprolyl isomerase (NCBI)||162, 166|
|RSP_4044||pgk||Phosphoglycerate kinase (NCBI)||166, 299|
|RSP_4045||fbaB||Fructose-bisphosphate aldolase class I (NCBI)||166, 299|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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