Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1001(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_1001
Module neighborhood information for RSP_1001
|Gene||Common Name||Description||Module membership|
|RSP_0316||RSP_0316||Transcriptional regulator, LuxR family (NCBI)||250, 341|
|RSP_0359||cbbI||Ribose-5-phosphate isomerase (NCBI)||127, 372|
|RSP_0380||RSP_0380||hypothetical protein (NCBI)||250, 341|
|RSP_0386||RSP_0386||Cold-shock DNA-binding domain protein (NCBI)||250, 341|
|RSP_0683||RSP_0683||hypothetical protein (NCBI)||81, 127|
|RSP_0758||RSP_0758||Lumazine-binding protein (NCBI)||127, 207|
|RSP_0762||RSP_0762||transcriptional regulator, XRE family (NCBI)||127, 162|
|RSP_0822||RSP_0822||hypothetical protein (NCBI)||35, 341|
|RSP_0999||RSP_0999||hypothetical protein (NCBI)||127, 162|
|RSP_1001||RSP_1001||hypothetical protein (NCBI)||127, 341|
|RSP_1007||RSP_1007||hypothetical protein (NCBI)||10, 127|
|RSP_1029||RSP_1029||possible Histidine triad (HIT) protein (NCBI)||127, 200|
|RSP_1126||rnr||Exoribonuclease R (NCBI)||127, 262|
|RSP_1133||RSP_1133||hypothetical protein (NCBI)||56, 341|
|RSP_1385||RSP_1385||hypothetical protein (NCBI)||81, 127|
|RSP_1430||RSP_1430||hypothetical protein (NCBI)||127, 223|
|RSP_1518||prrA||PrrA (RegA), Response regulator involved in oxygen regulation of photosynthesis genes (NCBI)||250, 341|
|RSP_1522||RSP_1522||hypothetical protein (NCBI)||162, 341|
|RSP_1550||RSP_1550||regulatory proteins, IclR family (NCBI)||127, 341|
|RSP_1678||RSP_1678||putative RecO protein (NCBI)||35, 341|
|RSP_1681||RSP_1681||two-component transcriptional regulator, winged helix family (NCBI)||223, 341|
|RSP_1682||RSP_1682||Two-component sensor histidine kinase (NCBI)||223, 341|
|RSP_1683||RSP_1683||putative kinase/phosphatase (NCBI)||267, 341|
|RSP_1684||RSP_1684||P-loop ATPase (NCBI)||223, 341|
|RSP_1685||RSP_1685||PTS system, IIA component (NCBI)||223, 341|
|RSP_1686||RSP_1686||Putative Phosphocarrier HPr protein (NCBI)||87, 341|
|RSP_1859||ppdK||Pyruvate phosphate dikinase (NCBI)||248, 341|
|RSP_1868||RSP_1868||serine-pyruvate aminotransferase (NCBI)||10, 127|
|RSP_1871||RSP_1871||Transcriptional regulator, GntR family (NCBI)||162, 341|
|RSP_1972||RSP_1972||hypothetical protein (NCBI)||250, 341|
|RSP_1973||RSP_1973||Probable SufE protein (NCBI)||250, 341|
|RSP_2120||RSP_2120||putative D-lactate dehydrogenase (cytochrome), FAD/FMN-containing oxidoreductase (NCBI)||10, 127|
|RSP_2139||RSP_2139||hypothetical protein (NCBI)||127, 162|
|RSP_2173||RSP_2173||hypothetical protein (NCBI)||127, 223|
|RSP_2174||RSP_2174||Putative ABC transporter, inner membrane subunit (NCBI)||127, 223|
|RSP_2175||RSP_2175||ABC transporter, ATPase subunit (NCBI)||48, 341|
|RSP_2216||ilvE||Aminotransferase, class IV (NCBI)||127, 207|
|RSP_2309||RSP_2309||hypothetical protein (NCBI)||127, 262|
|RSP_2399||RSP_2399||ABC putrescine transporter, inner membrane subunit (NCBI)||127, 291|
|RSP_2400||RSP_2400||ABC putrescine transporter, ATPase subunit (NCBI)||127, 162|
|RSP_2401||RSP_2401||putative 6-aminohexanoate-cyclic-dimer hydrolase (NCBI)||81, 127|
|RSP_2610||RSP_2610||trancriptional regulator, MerR family (NCBI)||81, 127|
|RSP_2611||ihfA||Histone-like DNA-binding protein (IHF) (NCBI)||81, 127|
|RSP_2618||RSP_2618||Putative hemolysin (NCBI)||10, 341|
|RSP_2621||ctrA||two component transcriptional regulator, winged helix family (NCBI)||250, 341|
|RSP_2762||RSP_2762||hypothetical protein (NCBI)||250, 341|
|RSP_2772||ftsJ||23S rRNA methylase (NCBI)||127, 308|
|RSP_2775||lpxD||UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase (NCBI)||127, 223|
|RSP_2782||aqpZ||aquaporin z, Major Intrinsic Protein (MIP) Family (NCBI)||250, 341|
|RSP_2862||RSP_2862||Glycine/D-amino acid oxidases (deaminating) (NCBI)||127, 207|
|RSP_2900||RSP_2900||Predicted permease (NCBI)||127, 223|
|RSP_2937||RSP_2937||hypothetical protein (NCBI)||35, 341|
|RSP_2940||RSP_2940||hypothetical protein (NCBI)||174, 341|
|RSP_2947||RSP_2947||Glutamate racemase (NCBI)||127, 223|
|RSP_2969||RSP_2969||hypothetical protein (NCBI)||127, 207|
|RSP_3563||RSP_3563||putative FAD-dependent glycerol-3-phosphate dehydrogenase protein (NCBI)||127, 207|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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