Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1007(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_1007
Module neighborhood information for RSP_1007
|Gene||Common Name||Description||Module membership|
|RSP_0359||cbbI||Ribose-5-phosphate isomerase (NCBI)||127, 372|
|RSP_0419||RSP_0419||hypothetical protein (NCBI)||10, 308|
|RSP_0674||RSP_0674||Putative HolB DNA polymerase III delta prime subunit (NCBI)||10, 36|
|RSP_0683||RSP_0683||hypothetical protein (NCBI)||81, 127|
|RSP_0715||RSP_0715||Ribonuclease T2 (NCBI)||10, 35|
|RSP_0758||RSP_0758||Lumazine-binding protein (NCBI)||127, 207|
|RSP_0762||RSP_0762||transcriptional regulator, XRE family (NCBI)||127, 162|
|RSP_0765||RSP_0765||SAM-dependent methyltransferase (NCBI)||10, 176|
|RSP_0766||RSP_0766||hypothetical protein (NCBI)||10, 56|
|RSP_0825||ppnk||probable inorganic polyphosphate/ATP-NAD kinase (NCBI)||1, 10|
|RSP_0845||RSP_0845||hypothetical protein (NCBI)||4, 10|
|RSP_0846||ribA||GTP cyclohydrolase II (NCBI)||4, 10|
|RSP_0847||RSP_0847||two component transcriptional regulator, winged helix family (NCBI)||10, 287|
|RSP_0897||RSP_0897||Glutathione S-transferase (NCBI)||10, 20|
|RSP_0999||RSP_0999||hypothetical protein (NCBI)||127, 162|
|RSP_1001||RSP_1001||hypothetical protein (NCBI)||127, 341|
|RSP_1006||RSP_1006||hypothetical protein (NCBI)||7, 10|
|RSP_1007||RSP_1007||hypothetical protein (NCBI)||10, 127|
|RSP_1029||RSP_1029||possible Histidine triad (HIT) protein (NCBI)||127, 200|
|RSP_1126||rnr||Exoribonuclease R (NCBI)||127, 262|
|RSP_1220||hrcA||heat-inducible transcription repressor HrcA (NCBI)||10, 216|
|RSP_1384||RSP_1384||hypothetical protein (NCBI)||10, 323|
|RSP_1385||RSP_1385||hypothetical protein (NCBI)||81, 127|
|RSP_1430||RSP_1430||hypothetical protein (NCBI)||127, 223|
|RSP_1550||RSP_1550||regulatory proteins, IclR family (NCBI)||127, 341|
|RSP_1794||RSP_1794||putative lytic transglycosylase (NCBI)||10, 250|
|RSP_1834||RSP_1834||hypothetical protein (NCBI)||10, 185|
|RSP_1868||RSP_1868||serine-pyruvate aminotransferase (NCBI)||10, 127|
|RSP_1891||RSP_1891||Zinc-binding dehydrogenase (NCBI)||10, 158|
|RSP_2119||RSP_2119||hypothetical protein (NCBI)||10, 381|
|RSP_2120||RSP_2120||putative D-lactate dehydrogenase (cytochrome), FAD/FMN-containing oxidoreductase (NCBI)||10, 127|
|RSP_2139||RSP_2139||hypothetical protein (NCBI)||127, 162|
|RSP_2142||RSP_2142||NifS-related protein (NCBI)||4, 10|
|RSP_2173||RSP_2173||hypothetical protein (NCBI)||127, 223|
|RSP_2174||RSP_2174||Putative ABC transporter, inner membrane subunit (NCBI)||127, 223|
|RSP_2216||ilvE||Aminotransferase, class IV (NCBI)||127, 207|
|RSP_2282||chrA||Chromate efflux pump, ChrA (NCBI)||10, 107|
|RSP_2309||RSP_2309||hypothetical protein (NCBI)||127, 262|
|RSP_2399||RSP_2399||ABC putrescine transporter, inner membrane subunit (NCBI)||127, 291|
|RSP_2400||RSP_2400||ABC putrescine transporter, ATPase subunit (NCBI)||127, 162|
|RSP_2401||RSP_2401||putative 6-aminohexanoate-cyclic-dimer hydrolase (NCBI)||81, 127|
|RSP_2505||creA||possible CreA protein (NCBI)||10, 237|
|RSP_2551||exoO||Glycosyl transferase, family 2 (NCBI)||10, 100|
|RSP_2610||RSP_2610||trancriptional regulator, MerR family (NCBI)||81, 127|
|RSP_2611||ihfA||Histone-like DNA-binding protein (IHF) (NCBI)||81, 127|
|RSP_2618||RSP_2618||Putative hemolysin (NCBI)||10, 341|
|RSP_2772||ftsJ||23S rRNA methylase (NCBI)||127, 308|
|RSP_2775||lpxD||UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase (NCBI)||127, 223|
|RSP_2825||cobK||Putative precorrin-6x reductase (NCBI)||1, 10|
|RSP_2862||RSP_2862||Glycine/D-amino acid oxidases (deaminating) (NCBI)||127, 207|
|RSP_2900||RSP_2900||Predicted permease (NCBI)||127, 223|
|RSP_2947||RSP_2947||Glutamate racemase (NCBI)||127, 223|
|RSP_2969||RSP_2969||hypothetical protein (NCBI)||127, 207|
|RSP_3563||RSP_3563||putative FAD-dependent glycerol-3-phosphate dehydrogenase protein (NCBI)||127, 207|
|RSP_3606||RSP_3606||Sigma54-2 (RNA polymerase sigma-54 factor) (NCBI)||10, 162|
|RSP_3836||RSP_3836||Putative metal-dependent hydrolase (NCBI)||10, 329|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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