Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_3014(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_3014
Module neighborhood information for RSP_3014
|Gene||Common Name||Description||Module membership|
|RSP_0297||RSP_0297||ABC branched chain amino acid transporter, ATPase subunit (NCBI)||103, 304|
|RSP_0413||RSP_0413||two component diguanylate cyclase (NCBI)||137, 236|
|RSP_0512||RSP_0512||multisensor hybrid histidine kinase (NCBI)||94, 304|
|RSP_0515||RSP_0515||hypothetical protein (NCBI)||137, 217|
|RSP_0516||RSP_0516||hypothetical protein (NCBI)||137, 217|
|RSP_0517||RSP_0517||hypothetical protein (NCBI)||137, 217|
|RSP_0518||RSP_0518||putative glycosyltransferase protein (NCBI)||137, 217|
|RSP_0523||RSP_0523||hypothetical protein (NCBI)||137, 217|
|RSP_0609||RSP_0609||hypothetical protein (NCBI)||146, 304|
|RSP_0856||btaA||S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase (NCBI)||6, 304|
|RSP_0919||RSP_0919||Short-chain dehydrogenase/reductase SDR (NCBI)||137, 150|
|RSP_0938||RSP_0938||hypothetical protein (NCBI)||304, 313|
|RSP_1117||RSP_1117||hypothetical protein (NCBI)||137, 246|
|RSP_1120||RSP_1120||protein secretion protein, HlyD family, membrane fusion protein (NCBI)||137, 246|
|RSP_1323||RSP_1323||hypothetical protein (NCBI)||116, 304|
|RSP_1357||RSP_1357||cytoplasmic sensor hybrid histidine kinase (NCBI)||74, 137|
|RSP_1500||RSP_1500||possible anti-sigma regulatory kinase (NCBI)||29, 304|
|RSP_1530||RSP_1530||hypothetical protein (NCBI)||137, 196|
|RSP_1618||RSP_1618||hypothetical protein (NCBI)||62, 304|
|RSP_1651||RSP_1651||hypothetical protein (NCBI)||304, 313|
|RSP_1694||RSP_1694||Probable short-chain dehydrogenase/reductase (NCBI)||233, 304|
|RSP_1753||RSP_1753||hypothetical protein (NCBI)||304, 355|
|RSP_1821||RSP_1821||Molybdopterin-containing oxidoreductase, probable formate dehydrogenase (NCBI)||38, 137|
|RSP_1954||RSP_1954||hypothetical protein (NCBI)||155, 304|
|RSP_2023||RSP_2023||hypothetical protein (NCBI)||229, 304|
|RSP_2067||RSP_2067||putative prophage LambdaSo, major capsid protein, HK97 family (NCBI)||137, 191|
|RSP_2068||RSP_2068||putative ClpP-like protease (NCBI)||235, 304|
|RSP_2069||RSP_2069||putative phage portal protein, HK97 family (NCBI)||137, 191|
|RSP_2070||RSP_2070||Putative Phage-related terminase (NCBI)||77, 304|
|RSP_2071||RSP_2071||hypothetical protein (NCBI)||77, 304|
|RSP_2177||RSP_2177||hypothetical protein (NCBI)||137, 191|
|RSP_2259||RSP_2259||Transmembrane protein (NCBI)||288, 304|
|RSP_2441||tlpS||Putative transducer like protein (NCBI)||304, 320|
|RSP_2769||RSP_2769||probable 5,10-methylenetetrahydrofolate reductase (NCBI)||238, 304|
|RSP_2813||mttB||putative trimethylamine methyltransferase protein (NCBI)||73, 304|
|RSP_3014||RSP_3014||putative aldolase protein (NCBI)||137, 304|
|RSP_3016||RSP_3016||Possible phenol degradation enzyme (NCBI)||137, 300|
|RSP_3018||RSP_3018||putative acyl-CoA dehydrogenase (NCBI)||304, 370|
|RSP_3019||RSP_3019||putative hydrolase (NCBI)||137, 300|
|RSP_3021||RSP_3021||putative catechol 2,3-dioxygenase (NCBI)||137, 300|
|RSP_3063||RSP_3063||AMP-dependent synthetase and ligase (NCBI)||74, 137|
|RSP_3096||RSP_3096||hypothetical protein (NCBI)||168, 304|
|RSP_3098||qoxB||QoxB, Quinol oxidase subunit II (NCBI)||168, 304|
|RSP_3100||RSP_3100||hypothetical protein (NCBI)||137, 236|
|RSP_3103||RSP_3103||hypothetical protein (NCBI)||19, 304|
|RSP_3104||fdh||Putative Glutathione-dependent formaldehyde dehydrogenase (NCBI)||288, 304|
|RSP_3204||RSP_3204||putative Oxidoreductase (NCBI)||124, 304|
|RSP_3283||RSP_3283||myo-inositol 2-dehydrogenase (NCBI)||116, 304|
|RSP_3357||gpU||putative phage tail protein U (NCBI)||40, 304|
|RSP_3358||gpX||Phage tail component protein X (NCBI)||282, 304|
|RSP_3427||RSP_3427||hypothetical protein (NCBI)||137, 238|
|RSP_3577||gvpG||putative gas vesicle synthesis protein (NCBI)||253, 304|
|RSP_3623||RSP_3623||putative integrase (NCBI)||137, 191|
|RSP_3659||RSP_3659||Predicted amidohydrolase (NCBI)||288, 304|
|RSP_3682||RSP_3682||hypothetical protein (NCBI)||74, 304|
|RSP_3763||RSP_3763||hypothetical protein (NCBI)||137, 138|
|RSP_3774||RSP_3774||hypothetical protein (NCBI)||304, 380|
|RSP_3775||RSP_3775||hypothetical protein (NCBI)||304, 380|
|RSP_3791||RSP_3791||hypothetical protein (NCBI)||137, 138|
|RSP_3814||RSP_3814||hypothetical protein (NCBI)||189, 304|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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