Organism : Bacillus cereus ATCC14579 | Module List :
Peptide methionine sulfoxide reductase (NCBI ptt file)
Functional Annotations (4)
|Peptide methionine sulfoxide reductase||cog/ cog|
|peptide-methionine-(S)-S-oxide reductase activity||go/ molecular_function|
|protein metabolic process||go/ biological_process|
Regulation information for BC1774(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for BC1774
Module neighborhood information for BC1774
|Gene||Common Name||Description||Module membership|
|BC0013||BC0013||Inosine-5'-monophosphate dehydrogenase (NCBI ptt file)||63, 137|
|BC0050||BC0050||4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (NCBI ptt file)||260, 406|
|BC0565||BC0565||Ankyrin (NCBI ptt file)||63, 265|
|BC0572||BC0572||Two-component response regulator (NCBI ptt file)||63, 286|
|BC0628||BC0628||Sensory box/GGDEF family protein (NCBI ptt file)||6, 260|
|BC0649||BC0649||Transcriptional regulator, DeoR family (NCBI ptt file)||63, 246|
|BC0766||BC0766||Methylthioribose transport system permease protein (NCBI ptt file)||20, 63|
|BC1044||BC1044||hypothetical protein (NCBI ptt file)||6, 260|
|BC1097||BC1097||hypothetical protein (NCBI ptt file)||63, 286|
|BC1258||BC1258||hypothetical protein (NCBI ptt file)||63, 427|
|BC1276||BC1276||hypothetical protein (NCBI ptt file)||6, 260|
|BC1512||BC1512||Heptaprenyl diphosphate synthase component I (NCBI ptt file)||260, 273|
|BC1513||BC1513||2-heptaprenyl-1,4-naphthoquinone methyltransferase (NCBI ptt file)||6, 260|
|BC1514||BC1514||Farnesyltransferase (NCBI ptt file)||260, 482|
|BC1774||BC1774||Peptide methionine sulfoxide reductase (NCBI ptt file)||63, 260|
|BC1840||BC1840||Transporter, Drug/Metabolite Exporter family (NCBI ptt file)||63, 141|
|BC1912||BC1912||Phage protein (NCBI ptt file)||63, 137|
|BC1913||BC1913||Phage protein (NCBI ptt file)||63, 137|
|BC1914||BC1914||Phage protein (NCBI ptt file)||63, 146|
|BC2096||BC2096||hypothetical protein (NCBI ptt file)||148, 260|
|BC2315||BC2315||DinB protein (NCBI ptt file)||63, 163|
|BC2428||BC2428||hypothetical protein (NCBI ptt file)||63, 225|
|BC2539||BC2539||Two-component sensor kinase yxdK (NCBI ptt file)||6, 63|
|BC2603||BC2603||hypothetical protein (NCBI ptt file)||63, 299|
|BC2740||BC2740||Protein translocase subunit SecY (NCBI ptt file)||6, 63|
|BC2794||BC2794||RNA polymerase ECF-type sigma factor (NCBI ptt file)||63, 105|
|BC3148||BC3148||Streptothricin acetyltransferase (NCBI ptt file)||63, 364|
|BC3160||BC3160||Transcriptional regulator, TetR family (NCBI ptt file)||243, 260|
|BC3497||BC3497||Transcriptional regulator, ArsR family (NCBI ptt file)||63, 146|
|BC3498||BC3498||Quinone oxidoreductase (NCBI ptt file)||63, 465|
|BC3584||BC3584||Oligopeptide-binding protein oppA (NCBI ptt file)||55, 63|
|BC3641||BC3641||Sensor protein atoS (NCBI ptt file)||6, 260|
|BC3645||BC3645||CcdC protein (NCBI ptt file)||63, 285|
|BC3747||BC3747||Sensory box/GGDEF family protein (NCBI ptt file)||63, 286|
|BC3854||BC3854||Predicted kinase related to hydroxyacetone kinase (NCBI ptt file)||260, 371|
|BC3876||BC3876||hypothetical protein (NCBI ptt file)||63, 228|
|BC3930||BC3930||Methyltransferase (NCBI ptt file)||243, 260|
|BC3948||BC3948||Cell division protein ftsW (NCBI ptt file)||243, 260|
|BC3962||BC3962||Arginine decarboxylase (NCBI ptt file)||159, 260|
|BC4014||BC4014||Neopullulanase (NCBI ptt file)||63, 299|
|BC4131||BC4131||hypothetical protein (NCBI ptt file)||63, 299|
|BC4146||BC4146||Protein erfK/srfK precursor (NCBI ptt file)||20, 63|
|BC4147||BC4147||Integral membrane protein (NCBI ptt file)||63, 482|
|BC4261||BC4261||hypothetical Cytosolic Protein (NCBI ptt file)||260, 406|
|BC4305||BC4305||hypothetical Cytosolic Protein (NCBI ptt file)||63, 72|
|BC4464||BC4464||Folylpolyglutamate synthase (NCBI ptt file)||48, 63|
|BC4514||BC4514||D-alanyl-D-alanine carboxypeptidase (NCBI ptt file)||63, 288|
|BC4666||BC4666||Two component system histidine kinase (NCBI ptt file)||63, 308|
|BC4839||BC4839||ABC transporter ATP-binding protein (NCBI ptt file)||63, 453|
|BC4946||BC4946||hypothetical protein (NCBI ptt file)||63, 330|
|BC4947||BC4947||hypothetical protein (NCBI ptt file)||20, 63|
|BC5068||BC5068||CrcB family protein (NCBI ptt file)||63, 285|
|BC5097||BC5097||Leucine-responsive regulatory protein (NCBI ptt file)||260, 302|
|BC5196||BC5196||N-acetylmuramoyl-L-alanine amidase (NCBI ptt file)||260, 390|
|BC5198||BC5198||DegV family protein (NCBI ptt file)||170, 260|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
- 2. Source gene
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