Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC2436(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC2436
|Gene||Common Name||Description||Module membership|
|BC0168||BC0168||Mrp protein (NCBI ptt file)||194, 475|
|BC0442||BC0442||Tellurium resistance protein terD (NCBI ptt file)||43, 322|
|BC0443||BC0443||Tellurium resistance protein terD (NCBI ptt file)||43, 322|
|BC0444||BC0444||Tellurium resistance protein terD (NCBI ptt file)||43, 322|
|BC0707||BC0707||Ferrous iron transport protein B (NCBI ptt file)||194, 335|
|BC0708||BC0708||Ferrous iron transport protein B (NCBI ptt file)||194, 335|
|BC0709||BC0709||Ferrous iron transport protein A (NCBI ptt file)||194, 335|
|BC0864||BC0864||Protein ecsB (NCBI ptt file)||194, 491|
|BC0867||BC0867||hypothetical protein (NCBI ptt file)||194, 359|
|BC0901||BC0901||Deblocking aminopeptidase (NCBI ptt file)||47, 194|
|BC1071||BC1071||hypothetical protein (NCBI ptt file)||194, 330|
|BC1224||BC1224||Acetyltransferase (NCBI ptt file)||322, 328|
|BC1225||BC1225||2'-5' RNA ligase (NCBI ptt file)||322, 328|
|BC1226||BC1226||Acetyl esterase (NCBI ptt file)||194, 328|
|BC1726||BC1726||hypothetical Membrane Spanning Protein (NCBI ptt file)||47, 194|
|BC1828||BC1828||Xaa-Pro aminopeptidase (NCBI ptt file)||194, 258|
|BC2024||BC2024||O6-methylguanine-DNA methyltransferase (NCBI ptt file)||194, 302|
|BC2025||BC2025||hypothetical protein (NCBI ptt file)||72, 194|
|BC2055||BC2055||Macrolide-efflux protein (NCBI ptt file)||194, 414|
|BC2101||BC2101||Formate--tetrahydrofolate ligase (NCBI ptt file)||322, 511|
|BC2230||BC2230||Macrolide-efflux protein (NCBI ptt file)||194, 208|
|BC2434||BC2434||Transcriptional regulator, MarR family (NCBI ptt file)||322, 483|
|BC2435||BC2435||Phosphoglycerate mutase (NCBI ptt file)||322, 483|
|BC2436||BC2436||SpoIISA like protein (NCBI ptt file)||194, 322|
|BC3503||BC3503||Transporter, Sodium/bile acid symporter family (NCBI ptt file)||120, 194|
|BC3711||BC3711||DNA integration/recombination/invertion protein (NCBI ptt file)||194, 414|
|BC3833||BC3833||Succinyl-CoA synthetase alpha chain (NCBI ptt file)||302, 322|
|BC3834||BC3834||Succinyl-CoA synthetase beta chain (NCBI ptt file)||302, 322|
|BC4003||BC4003||5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (NCBI ptt file)||194, 218|
|BC4133||BC4133||Zinc metallohydrolase (NCBI ptt file)||137, 194|
|BC4224||BC4224||Glycine dehydrogenase [decarboxylating] (NCBI ptt file)||322, 328|
|BC4225||BC4225||Glycine dehydrogenase [decarboxylating] (NCBI ptt file)||322, 328|
|BC4226||BC4226||Aminomethyltransferase (NCBI ptt file)||322, 328|
|BC4257||BC4257||hypothetical Cytosolic Protein (NCBI ptt file)||194, 225|
|BC4516||BC4516||Succinate dehydrogenase iron-sulfur protein (NCBI ptt file)||322, 328|
|BC4517||BC4517||Succinate dehydrogenase flavoprotein subunit (NCBI ptt file)||322, 328|
|BC4518||BC4518||Succinate dehydrogenase cytochrome b558 subunit (NCBI ptt file)||322, 328|
|BC4571||BC4571||Deblocking aminopeptidase (NCBI ptt file)||322, 483|
|BC4592||BC4592||Malate dehydrogenase (NCBI ptt file)||43, 322|
|BC4593||BC4593||Isocitrate dehydrogenase [NADP] (NCBI ptt file)||43, 322|
|BC4594||BC4594||Citrate synthase (NCBI ptt file)||43, 322|
|BC4623||BC4623||Alanine dehydrogenase (NCBI ptt file)||48, 194|
|BC4634||BC4634||Protein ecsC (NCBI ptt file)||194, 438|
|BC4921||BC4921||Cytosol aminopeptidase (NCBI ptt file)||107, 322|
|BC4926||BC4926||Thioredoxin reductase (NCBI ptt file)||107, 322|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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