Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC2915(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC2915
|Gene||Common Name||Description||Module membership|
|BC0364||BC0364||tRNA (Uracil-5-) -methyltransferase (NCBI ptt file)||55, 242|
|BC0372||BC0372||hypothetical protein (NCBI ptt file)||249, 453|
|BC0687||BC0687||IG hypothetical 22578 (NCBI ptt file)||453, 509|
|BC0882||BC0882||Two-component response regulator comA (NCBI ptt file)||85, 453|
|BC0903||BC0903||Methyltransferase (NCBI ptt file)||55, 249|
|BC0927||BC0927||hypothetical protein (NCBI ptt file)||55, 249|
|BC0932||BC0932||hypothetical protein (NCBI ptt file)||256, 453|
|BC1065||BC1065||hypothetical Membrane Spanning Protein (NCBI ptt file)||30, 453|
|BC1119||BC1119||Two-component response regulator yvrH (NCBI ptt file)||55, 230|
|BC1265||BC1265||hypothetical Cytosolic Protein (NCBI ptt file)||453, 509|
|BC1837||BC1837||Methylmalonyl CoA epimerase (NCBI ptt file)||55, 177|
|BC1943||BC1943||Glycosyltransferase (NCBI ptt file)||239, 453|
|BC1999||BC1999||IolS protein (NCBI ptt file)||108, 453|
|BC2090||BC2090||hypothetical protein (NCBI ptt file)||254, 453|
|BC2172||BC2172||IG hypothetical 18880 (NCBI ptt file)||55, 159|
|BC2173||BC2173||hypothetical Membrane Spanning Protein (NCBI ptt file)||55, 159|
|BC2330||BC2330||Zn-dependent hydrolase (NCBI ptt file)||453, 460|
|BC2348||BC2348||Acetyltransferase (NCBI ptt file)||163, 453|
|BC2363||BC2363||Aspartate-semialdehyde dehydrogenase (NCBI ptt file)||123, 453|
|BC2407||BC2407||hypothetical protein (NCBI ptt file)||286, 453|
|BC2430||BC2430||Methyltransferase (NCBI ptt file)||217, 453|
|BC2445||BC2445||hypothetical protein (NCBI ptt file)||55, 308|
|BC2716||BC2716||Glucose dehydrogenase [pyrroloquinoline-quinone] (NCBI ptt file)||55, 308|
|BC2742||BC2742||Transcriptional regulator, GntR family (NCBI ptt file)||9, 453|
|BC2810||BC2810||hypothetical protein (NCBI ptt file)||321, 453|
|BC2895||BC2895||hypothetical protein (NCBI ptt file)||10, 55|
|BC2915||BC2915||hypothetical protein (NCBI ptt file)||55, 453|
|BC2923||BC2923||Acetyltransferase (NCBI ptt file)||193, 453|
|BC3014||BC3014||hypothetical protein (NCBI ptt file)||72, 453|
|BC3029||BC3029||hypothetical protein (NCBI ptt file)||209, 453|
|BC3114||BC3114||Two-component sensor kinase ycbA (NCBI ptt file)||55, 265|
|BC3150||BC3150||Transcriptional regulator, AraC family (NCBI ptt file)||359, 453|
|BC3170||BC3170||Transposase (NCBI ptt file)||453, 461|
|BC3216||BC3216||1-aminocyclopropane-1-carboxylate deaminase (NCBI ptt file)||72, 453|
|BC3227||BC3227||Two component system histidine kinase (NCBI ptt file)||55, 256|
|BC3228||BC3228||Two-component response regulator (NCBI ptt file)||55, 242|
|BC3322||BC3322||hypothetical protein (NCBI ptt file)||197, 453|
|BC3366||BC3366||oxetanocin A resistance protein (NCBI ptt file)||254, 453|
|BC3446||BC3446||hypothetical protein (NCBI ptt file)||428, 453|
|BC3457||BC3457||hypothetical protein (NCBI ptt file)||62, 453|
|BC3528||BC3528||Sporulation kinase (NCBI ptt file)||8, 55|
|BC3584||BC3584||Oligopeptide-binding protein oppA (NCBI ptt file)||55, 63|
|BC3687||BC3687||2',3'-cyclic-nucleotide 2'-phosphodiesterase (NCBI ptt file)||209, 453|
|BC3919||BC3919||hypothetical Membrane Spanning Protein (NCBI ptt file)||288, 453|
|BC3985||BC3985||hypothetical Cytosolic Protein (NCBI ptt file)||55, 449|
|BC4021||BC4021||hypothetical protein (NCBI ptt file)||55, 249|
|BC4022||BC4022||ABC transporter ATP-binding protein (NCBI ptt file)||55, 249|
|BC4246||BC4246||hypothetical protein (NCBI ptt file)||55, 449|
|BC4247||BC4247||hypothetical protein (NCBI ptt file)||6, 55|
|BC4356||BC4356||Transcriptional regulator, MerR family (NCBI ptt file)||55, 148|
|BC4421||BC4421||Quinolinate synthetase A (NCBI ptt file)||55, 177|
|BC4422||BC4422||Nicotinate-nucleotide pyrophosphorylase [carboxylating] (NCBI ptt file)||9, 55|
|BC4818||BC4818||hypothetical protein (NCBI ptt file)||246, 453|
|BC4839||BC4839||ABC transporter ATP-binding protein (NCBI ptt file)||63, 453|
|BC5031||BC5031||Methionyl-tRNA synthetase (NCBI ptt file)||408, 453|
|BC5411||BC5411||Two-component response regulator yhcZ (NCBI ptt file)||55, 177|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
- 2. Source gene
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