Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC3214(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC3214
|Gene||Common Name||Description||Module membership|
|BC0399||BC0399||Oxidoreductase (NCBI ptt file)||30, 85|
|BC0559||BC0559||Methyl-accepting chemotaxis protein (NCBI ptt file)||489, 517|
|BC0560||BC0560||Two component system histidine kinase (NCBI ptt file)||489, 516|
|BC0605||BC0605||hypothetical protein (NCBI ptt file)||155, 489|
|BC0860||BC0860||Multidrug resistance protein B (NCBI ptt file)||144, 489|
|BC1046||BC1046||hypothetical protein (NCBI ptt file)||9, 489|
|BC1047||BC1047||Protease production regulatory protein hpr (NCBI ptt file)||30, 199|
|BC1065||BC1065||hypothetical Membrane Spanning Protein (NCBI ptt file)||30, 453|
|BC1124||BC1124||Methyl-accepting chemotaxis protein (NCBI ptt file)||428, 489|
|BC1278||BC1278||Signal peptidase I (NCBI ptt file)||155, 489|
|BC1561||BC1561||hypothetical Cytosolic Protein (NCBI ptt file)||10, 489|
|BC1600||BC1600||Ribonuclease H (NCBI ptt file)||454, 489|
|BC1625||BC1625||Chemotaxis motA protein (NCBI ptt file)||30, 199|
|BC1626||BC1626||Chemotaxis motB protein (NCBI ptt file)||30, 199|
|BC1656||BC1656||Flagellin (NCBI ptt file)||30, 85|
|BC1708||BC1708||hypothetical protein (NCBI ptt file)||30, 130|
|BC1723||BC1723||Prolipoprotein diacylglyceryl transferase (NCBI ptt file)||30, 250|
|BC1758||BC1758||hypothetical Membrane Spanning Protein (NCBI ptt file)||30, 147|
|BC2080||BC2080||hypothetical Membrane Associated Protein (NCBI ptt file)||30, 502|
|BC2081||BC2081||DNA segregation ATPase and related proteins (FtsK/SpoIIIE family) (NCBI ptt file)||30, 502|
|BC2085||BC2085||hypothetical protein (NCBI ptt file)||30, 502|
|BC2318||BC2318||hypothetical protein (NCBI ptt file)||97, 489|
|BC2362||BC2362||Transcriptional regulators, LysR family (NCBI ptt file)||30, 85|
|BC2526||BC2526||Transcriptional regulator, GntR family (NCBI ptt file)||30, 428|
|BC2601||BC2601||hypothetical protein (NCBI ptt file)||147, 489|
|BC2607||BC2607||hypothetical protein (NCBI ptt file)||308, 489|
|BC2696||BC2696||Intein-containing protein (NCBI ptt file)||84, 489|
|BC2746||BC2746||hypothetical protein (NCBI ptt file)||435, 489|
|BC2819||BC2819||hypothetical protein (NCBI ptt file)||85, 489|
|BC2847||BC2847||Ribosomal-protein-alanine acetyltransferase (NCBI ptt file)||404, 489|
|BC2876||BC2876||Acetyltransferase (NCBI ptt file)||30, 364|
|BC2888||BC2888||Integral membrane protein (NCBI ptt file)||153, 489|
|BC2901||BC2901||ABC transporter permease protein (NCBI ptt file)||30, 204|
|BC2904||BC2904||Transcriptional regulator, GntR family (NCBI ptt file)||30, 60|
|BC3113||BC3113||Two-component response regulator ycbB (NCBI ptt file)||30, 199|
|BC3214||BC3214||hypothetical protein (NCBI ptt file)||30, 489|
|BC3215||BC3215||hypothetical protein (NCBI ptt file)||30, 253|
|BC3261||BC3261||hypothetical protein (NCBI ptt file)||30, 279|
|BC3319||BC3319||hypothetical protein (NCBI ptt file)||289, 489|
|BC3408||BC3408||Transcriptional regulator, MarR family (NCBI ptt file)||454, 489|
|BC3449||BC3449||Catabolite gene activator (NCBI ptt file)||454, 489|
|BC3510||BC3510||hypothetical protein (NCBI ptt file)||30, 291|
|BC3618||BC3618||Peptidoglycan N-acetylglucosamine deacetylase (NCBI ptt file)||30, 517|
|BC3694||BC3694||N-acetylmuramoyl-L-alanine amidase (NCBI ptt file)||30, 279|
|BC3695||BC3695||holin (NCBI ptt file)||30, 279|
|BC3698||BC3698||Cell wall endopeptidase, family M23/M37 (NCBI ptt file)||30, 279|
|BC3699||BC3699||Antigen (NCBI ptt file)||30, 279|
|BC3700||BC3700||Phage protein (NCBI ptt file)||30, 197|
|BC3961||BC3961||putative transcriptional regulator (NCBI ptt file)||364, 489|
|BC4512||BC4512||Chemotaxis motB protein (NCBI ptt file)||30, 158|
|BC4513||BC4513||Chemotaxis motA protein (NCBI ptt file)||248, 489|
|BC4611||BC4611||Cytosolic protein containing multiple CBS domains (NCBI ptt file)||97, 489|
|BC4619||BC4619||hypothetical protein (NCBI ptt file)||30, 316|
|BC4661||BC4661||Acetoin utilization acuB protein (NCBI ptt file)||30, 516|
|BC4816||BC4816||hypothetical protein (NCBI ptt file)||276, 489|
|BC4960||BC4960||Transcriptional regulator, DeoR family (NCBI ptt file)||30, 334|
|BC5114||BC5114||hypothetical protein (NCBI ptt file)||489, 498|
|BC5234||BC5234||N-acetylmuramoyl-L-alanine amidase (NCBI ptt file)||276, 489|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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