Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC4805(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC4805
|Gene||Common Name||Description||Module membership|
|BC0070||BC0070||Cell cycle protein MesJ (NCBI ptt file)||483, 491|
|BC0419||BC0419||Hydroxyethylthiazole kinase (NCBI ptt file)||409, 491|
|BC0420||BC0420||Thiamin-phosphate pyrophosphorylase (NCBI ptt file)||409, 491|
|BC0476||BC0476||Acetylornithine deacetylase (NCBI ptt file)||105, 491|
|BC0508||BC0508||hypothetical protein (NCBI ptt file)||488, 491|
|BC0540||BC0540||Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (NCBI ptt file)||422, 491|
|BC0760||BC0760||hypothetical protein (NCBI ptt file)||26, 491|
|BC0864||BC0864||Protein ecsB (NCBI ptt file)||194, 491|
|BC1087||BC1087||hypothetical protein (NCBI ptt file)||333, 491|
|BC1111||BC1111||phosphoesterase (NCBI ptt file)||105, 491|
|BC1128||BC1128||Isocitrate lyase (NCBI ptt file)||218, 400|
|BC1136||BC1136||Signal peptidase I (NCBI ptt file)||439, 491|
|BC1166||BC1166||hypothetical Exported Protein (NCBI ptt file)||285, 400|
|BC1284||BC1284||Immune inhibitor A precursor (NCBI ptt file)||256, 400|
|BC1293||BC1293||Ribosomal large subunit pseudouridine synthase D (NCBI ptt file)||76, 400|
|BC1610||BC1610||Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file)||409, 491|
|BC1655||BC1655||hypothetical protein (NCBI ptt file)||258, 491|
|BC1790||BC1790||Succinyl-CoA:coenzyme A transferase (NCBI ptt file)||294, 400|
|BC2017||BC2017||Ribosomal-protein-serine acetyltransferase (NCBI ptt file)||284, 400|
|BC2018||BC2018||IolS protein (NCBI ptt file)||180, 491|
|BC2478||BC2478||ABC transporter ATP-binding protein (NCBI ptt file)||409, 491|
|BC2515||BC2515||Macrolide-efflux protein (NCBI ptt file)||241, 491|
|BC2616||BC2616||Cytochrome P450(MEG) (NCBI ptt file)||491, 511|
|BC2732||BC2732||hypothetical protein (NCBI ptt file)||48, 491|
|BC2793||BC2793||ATP-dependent Clp protease proteolytic subunit (NCBI ptt file)||105, 491|
|BC2852||BC2852||Cell division protein DIVIC (NCBI ptt file)||409, 491|
|BC2891||BC2891||SAM-dependent methyltransferase (NCBI ptt file)||216, 491|
|BC3107||BC3107||UvrC-like protein (NCBI ptt file)||286, 491|
|BC3419||BC3419||Long-chain-fatty-acid--CoA ligase (NCBI ptt file)||445, 491|
|BC3443||BC3443||hypothetical Membrane Spanning Protein (NCBI ptt file)||48, 491|
|BC3478||BC3478||Phosphoglycerate mutase (NCBI ptt file)||233, 491|
|BC3894||BC3894||DnaK suppressor protein (NCBI ptt file)||361, 491|
|BC3968||BC3968||hypothetical protein (NCBI ptt file)||137, 491|
|BC4073||BC4073||Anti-sigma F factor (NCBI ptt file)||203, 491|
|BC4084||BC4084||Magnesium and cobalt transport protein corA (NCBI ptt file)||491, 511|
|BC4762||BC4762||Phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file)||234, 400|
|BC4804||BC4804||hypothetical protein (NCBI ptt file)||491, 511|
|BC4807||BC4807||Ferrous iron transport protein A (NCBI ptt file)||491, 511|
|BC4897||BC4897||IG hypothetical 16740 (NCBI ptt file)||47, 491|
|BC4915||BC4915||ComA operon protein 2 (NCBI ptt file)||105, 491|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Network Portal presents functional ontologies from KEGG, GO, TIGRFAM, and COG as separate tables that include function name, type, corrected and uncorrected hypergeometric p-values, and the number of genes assigned to this category out of total number of genes in the module.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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