Organism : Clostridium acetobutylicum | Module List :
Predicted phosphatase (NCBI ptt file)
Functional Annotations (2)
|hydrolase activity||go/ molecular_function|
Regulation information for CAC0605(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0605
|hydrolase activity||go/ molecular_function|
Module neighborhood information for CAC0605
|Gene||Common Name||Description||Module membership|
|CAC0125||dnaX||DNA-directed DNA polymerase, III chain (dnaX) (NCBI ptt file)||10, 356|
|CAC0237||CAC0237||ABC transporter, permease component (NCBI ptt file)||106, 287|
|CAC0247||CAC0247||Predicted permease (NCBI ptt file)||66, 356|
|CAC0291||CAC0291||FUSION: methionine sintase I (cobalamin dependent) and 5,10 methylenetetrahydrofolate reductase (NCBI ptt file)||259, 287|
|CAC0371||CAC0371||Response regulator (CheY-like domain and HTH domain) (NCBI ptt file)||71, 287|
|CAC0418||CAC0418||Predicted phosphatase, HAD family (NCBI ptt file)||261, 287|
|CAC0605||CAC0605||Predicted phosphatase (NCBI ptt file)||287, 356|
|CAC0607||CAC0607||Aspartyl aminopeptidase (NCBI ptt file)||287, 309|
|CAC0719||CAC0719||Epoxide hydrolase, similar to eukaryotic (NCBI ptt file)||150, 356|
|CAC1018||CAC1018||Predicted membrane protein (NCBI ptt file)||287, 326|
|CAC1028||CAC1028||Hydrolase of alpha/beta superfamily, possible membrane associated lipase (NCBI ptt file)||276, 356|
|CAC1046||CAC1046||Transcriptional regulator, LysR family (NCBI ptt file)||71, 287|
|CAC1330||CAC1330||Metal-dependent hydrolases of the beta-lactamase superfamily, possible sulfatase (NCBI ptt file)||287, 356|
|CAC1424||CAC1424||Zn-dependent hydrolase, glyoxylase II family (NCBI ptt file)||287, 326|
|CAC1449||CAC1449||Hypothetical protein (NCBI ptt file)||239, 356|
|CAC1516||CAC1516||Response regulator (CheY-like receiver domain and HTH DNA-binding domain) (NCBI ptt file)||140, 287|
|CAC1582||CAC1582||Membrane associated histidine kinase-like ATPase (NCBI ptt file)||259, 287|
|CAC1969||CAC1969||Possible plasmid transfer factor, TraK (NCBI ptt file)||287, 291|
|CAC2362||thrS||Threonyl-tRNA synthetase (NCBI ptt file)||10, 356|
|CAC2472||CAC2472||Alpha/beta superfamily hydrolase (NCBI ptt file)||261, 287|
|CAC2552||CAC2552||Predicted transcriptional regulator CRO family (NCBI ptt file)||196, 356|
|CAC2553||CAC2553||Uncharacterized mebrane protein, YOAS B.subtilis ortholog (NCBI ptt file)||196, 356|
|CAC2723||CAC2723||Deacethylase/dipeptidase/desuccinylase family of Zn-dependent hydrolases (NCBI ptt file)||49, 356|
|CAC2735||CAC2735||Response regulator (CheY-like receiver domain and HTH-type DNA-binding) (NCBI ptt file)||74, 287|
|CAC2832||CAC2832||PLP-dependent aminotransferase (NCBI ptt file)||261, 356|
|CAC2996||CAC2996||Superfamily II DNA/RNA helicase, SNF2 family (NCBI ptt file)||259, 287|
|CAC3088||CAC3088||NtrC family transcriptional regulator, ATPase domain fused to two PAS domains (NCBI ptt file)||113, 287|
|CAC3335||CAC3335||Short-chain alcohol dehydrogenase family enzyme (NCBI ptt file)||212, 356|
|CAC3336||CAC3336||Predicted cAMP-binding domain, regulatory protein, diverged (NCBI ptt file)||212, 356|
|CAC3457||CAC3457||Predicted membrane protein (NCBI ptt file)||287, 356|
|CAC3474||CAC3474||Predicted MDR-type permease (NCBI ptt file)||108, 356|
|CAC3508||CAC3508||Predicted aminopeptidase (NCBI ptt file)||240, 356|
|CAC3509||CAC3509||Transcriptional regulator, MerR family (duplicated domains) (NCBI ptt file)||287, 356|
|CAC3578||fabH||3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file)||20, 356|
|CAC3579||CAC3579||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||20, 356|
|CAC3587||CAC3587||DNA replication protein DnaD (NCBI ptt file)||13, 287|
|CAC3704||CAC3704||Hypothetical protein, CF-7 family (NCBI ptt file)||44, 356|
|CAC3712||CAC3712||Hypothetical protein (NCBI ptt file)||44, 356|
|CAC3730||soj||Chromosome partitioning MinD-family ATPase, SOJ (NCBI ptt file)||49, 356|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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