Organism : Clostridium acetobutylicum | Module List :
Predicted transciptinal regulator (HTH-type), YPUH B.subtilis ortholog (NCBI ptt file)
Functional Annotations (2)
|Predicted transcriptional regulator containing the HTH domain||cog/ cog|
Regulation information for CAC2060(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2060
|Predicted transcriptional regulator containing the HTH domain||cog/ cog|
Module neighborhood information for CAC2060
|Gene||Common Name||Description||Module membership|
|CAC0187||nagB||Glucosamine-6-phosphate isomerase (glucosamine-6-phosphate deaminase) (gene nagB) (NCBI ptt file)||11, 215|
|CAC0272||CAC0272||Amino acid transporter (NCBI ptt file)||201, 215|
|CAC0330||CAC0330||Propiloprotein diacylglyceryltransferase (NCBI ptt file)||201, 215|
|CAC0414||CAC0414||Hypothetical protein (NCBI ptt file)||211, 249|
|CAC0478||CAC0478||ACT domain containing transcriptional regulators, related to gcvR of E.coli (NCBI ptt file)||211, 299|
|CAC0506||CAC0506||Penicillin-binding protein (NCBI ptt file)||151, 215|
|CAC0507||CAC0507||Predicted metal-dependent membrane hydrolase (NCBI ptt file)||151, 215|
|CAC0510||murB||UDP-N-acetylenolpyruvoylglucosamine reductase (murB) (NCBI ptt file)||215, 224|
|CAC0683||CAC0683||Hypothetical protein (NCBI ptt file)||8, 215|
|CAC0684||CAC0684||CBS domains (NCBI ptt file)||215, 302|
|CAC0685||CAC0685||Putative Mn transporter, NRAMP family (NCBI ptt file)||151, 215|
|CAC0819||CAC0819||Phosphoribosylpyrophosphate synthetase (NCBI ptt file)||215, 251|
|CAC1234||pheB||Chorismate mutase PheB of B.subtilis ortholog (NCBI ptt file)||76, 215|
|CAC1272||CAC1272||Predicted membrane protein (NCBI ptt file)||106, 215|
|CAC1691||CAC1691||Predicted glycosyltransferase (NCBI ptt file)||201, 211|
|CAC1737||CAC1737||N6-adenine-specific methylase (NCBI ptt file)||211, 319|
|CAC1786||codY||Transcriptional regulator, CodY B.subtilis ortholog (NCBI ptt file)||215, 251|
|CAC1814||pgsA||Phosphatidylglycerophosphate synthase (NCBI ptt file)||211, 350|
|CAC1847||lytB/rpsA||Fusion Penicillin tolerance LytB domain (N-terminus) and S1 ribosomal protein (C-terminus) (NCBI ptt file)||211, 350|
|CAC1850||CAC1850||Transcriptional regulators, RpiR family (NCBI ptt file)||64, 211|
|CAC1851||CAC1851||Predicted pseudouridylate synthase (NCBI ptt file)||64, 211|
|CAC2060||CAC2060||Predicted transciptinal regulator (HTH-type), YPUH B.subtilis ortholog (NCBI ptt file)||211, 215|
|CAC2061||CAC2061||Uncharacterized ptotrin, YPUG B.subtilis ortholog (NCBI ptt file)||211, 215|
|CAC2062||CAC2062||TRNA nucleotidyltransferase family enzyme (NCBI ptt file)||76, 211|
|CAC2080||CAC2080||Predicted geranylgeranyl pyrophosphate synthase (NCBI ptt file)||211, 350|
|CAC2084||nusB||Transcription termination factor NusB (NCBI ptt file)||211, 350|
|CAC2276||CAC2276||Protein related to N-terminal domain of SS-DNA-specific exonuclease RecJ (NCBI ptt file)||215, 327|
|CAC2315||CAC2315||DTDP-4-dehydrorhamnose reductase, rfbD ortholog (NCBI ptt file)||211, 350|
|CAC2316||CAC2316||Polysaccharide deacetylase-like protein; Xylanase/chitin deacetylase family enzyme (NCBI ptt file)||211, 350|
|CAC2317||tagA||Teichoic acid biosynthesis protein, tagA (NCBI ptt file)||84, 211|
|CAC2318||CAC2318||Membrane protein of EXOQ family, involved in exopolysaccharide production (NCBI ptt file)||211, 350|
|CAC2319||CAC2319||Hypothetical protein (NCBI ptt file)||211, 350|
|CAC2320||CAC2320||Predicted glycosyltransferase (NCBI ptt file)||211, 350|
|CAC2324||CAC2324||Glycosyltransferase (NCBI ptt file)||82, 215|
|CAC2331||CAC2331||DTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file)||86, 211|
|CAC2564||CAC2564||Hypothetical protein (NCBI ptt file)||153, 215|
|CAC3034||CAC3034||MutS-like mismatch repair protein, ATPases (NCBI ptt file)||11, 215|
|CAC3092||231||amidase, germination specific (cwlC/cwlD B.subtilis ortholog) (NCBI ptt file)||160, 215|
|CAC3195||CAC3195||Glycyl-tRNA synthetase (NCBI ptt file)||90, 215|
|CAC3208||CAC3208||Uncharacterized protein, YABQ B.subtilis (NCBI ptt file)||211, 350|
|CAC3209||CAC3209||Uncharacterized protein, YABP B.subtilis (NCBI ptt file)||58, 211|
|CAC3210||CAC3210||Predicted RNA-binding protein, YABO B.subtilis ortholog (NCBI ptt file)||215, 281|
|CAC3538||CAC3538||Metallo-beta-lactamase superfamily hydrolase (NCBI ptt file)||211, 350|
|CAC3539||murA||UDP-N-acetylglucosamine enolpyruvyl transferase (NCBI ptt file)||215, 350|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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