Organism : Clostridium acetobutylicum | Module List :
Predicted glycosyltransferase (NCBI ptt file)
Functional Annotations (1)
|Predicted glycosyltransferases||cog/ cog|
Regulation information for CAC2172(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2172
|Predicted glycosyltransferases||cog/ cog|
Module neighborhood information for CAC2172
|Gene||Common Name||Description||Module membership|
|CAC0066||CAC0066||ABC transporter, ATP-binding protein (NCBI ptt file)||28, 353|
|CAC0119||cheW||Chemotaxis protein cheW (NCBI ptt file)||19, 28|
|CAC0304||motA||Chemotaxis motility protein A, gene motA (NCBI ptt file)||93, 96|
|CAC0305||motB||Chemotaxis motility protein B, gene motB (NCBI ptt file)||93, 96|
|CAC0383||CAC0383||PTS cellobiose-specific component IIA (NCBI ptt file)||28, 324|
|CAC0736||CAC0736||Possible glucanotransferase (putative endo alpha-1,4 polygalactosaminidase related protein) (NCBI ptt file)||28, 241|
|CAC0773||CAC0773||ABC-type cobalt transport protein ATPase component (NCBI ptt file)||28, 253|
|CAC0798||CAC0798||Phosphatidylserine synthase (NCBI ptt file)||28, 202|
|CAC1021||CAC1021||Predicted Fe-S oxidoreductases (NCBI ptt file)||28, 105|
|CAC1088||glpX||GlpX-like protein (Fructose-1,6-bisphosphatase related protein) (NCBI ptt file)||19, 28|
|CAC1435||CAC1435||S-adenosylmethionine-dependent methyltransferases (NCBI ptt file)||28, 327|
|CAC1574||CAC1574||NAD-dependent 4-hydroxybutyrate dehydrogenase (NCBI ptt file)||28, 90|
|CAC2154||flgE||Flagellar hook protein FlgE. (NCBI ptt file)||96, 285|
|CAC2157||fliK||Flagellar hook-length control protein fliK (NCBI ptt file)||96, 126|
|CAC2166||CAC2166||Nucleoside-diphosphate-sugar epimerase (NCBI ptt file)||96, 217|
|CAC2167||CAC2167||Flagellin family protein (NCBI ptt file)||96, 122|
|CAC2171||CAC2171||Predicted glycosyltransferase (NCBI ptt file)||96, 107|
|CAC2172||CAC2172||Predicted glycosyltransferase (NCBI ptt file)||28, 96|
|CAC2173||CAC2173||Glycosyltransferase (NCBI ptt file)||96, 107|
|CAC2175||CAC2175||Glycosyltransferase (NCBI ptt file)||96, 107|
|CAC2194||CAC2194||Predicted nucleoside-diphosphate sugar epimerase (NCBI ptt file)||96, 285|
|CAC2213||CAC2213||Hypothetical protein (NCBI ptt file)||96, 192|
|CAC2246||CAC2246||Lysophospholipase L2 PLDB, hydrolase of alpha/beta superfamily (NCBI ptt file)||28, 79|
|CAC2401||CAC2401||Activator of 2-hydroxyglutaryl-CoA dehydratase (duplicated HSP70 class ATPase domain) fused to uncharacterized conserved protein (NCBI ptt file)||28, 84|
|CAC2619||CAC2619||Acyl-CoA thioesterase family protein (NCBI ptt file)||9, 96|
|CAC2879||upp||Uracil phosphoribosyltransferase (NCBI ptt file)||28, 310|
|CAC3388||CAC3388||Methyl-accepting chemotaxis protein (NCBI ptt file)||48, 96|
|CAC3441||CAC3441||DNA/RNA helicase, SNF2 (NCBI ptt file)||28, 353|
|CAC3442||polC||DNA polymerase III (alpha subunit) (NCBI ptt file)||28, 353|
|CAC3443||bltR||Multidrug-efflux transporter transcription regulator, BltR (NCBI ptt file)||28, 202|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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