Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2259(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2259
|Gene||Common Name||Description||Module membership|
|CAC0132||CAC0132||Hypothetical protein (NCBI ptt file)||247, 270|
|CAC0349||CAC0349||Predicted membrane protein (NCBI ptt file)||246, 351|
|CAC0419||CAC0419||Predicted membrane protein (NCBI ptt file)||247, 351|
|CAC0619||CAC0619||Nitrate ABC transporter ATP binding protein (NCBI ptt file)||190, 270|
|CAC0698||CAC0698||Predicted hydrolase of the HAD superfamily (NCBI ptt file)||217, 351|
|CAC0886||CAC0886||Hypothetical protein (NCBI ptt file)||207, 270|
|CAC0925||CAC0925||TPR-repeat-containing protein (NCBI ptt file)||53, 270|
|CAC0926||CAC0926||TPR-repeat-containing protein (NCBI ptt file)||123, 270|
|CAC1060||CAC1060||Predicted membrane protein (NCBI ptt file)||336, 351|
|CAC1064||CAC1064||TPR-repeat-containing protein (NCBI ptt file)||49, 351|
|CAC1163||CAC1163||Hypothetical protein (NCBI ptt file)||16, 351|
|CAC1167||CAC1167||Hypothetical protein (NCBI ptt file)||246, 351|
|CAC1213||CAC1213||Predicted membrane protein (NCBI ptt file)||246, 351|
|CAC1409||CAC1409||Predicted membrane protein (NCBI ptt file)||78, 351|
|CAC1442||CAC1442||Hypothetical protein (NCBI ptt file)||270, 317|
|CAC1446||CAC1446||Hypothetical protein (NCBI ptt file)||123, 270|
|CAC1500||CAC1500||Predicted membrane protein (NCBI ptt file)||13, 351|
|CAC1517||CAC1517||Membrane associated sensory transduction histidine kinase (NCBI ptt file)||140, 351|
|CAC1650||CAC1650||Hypothetical protein, CF-38 family (NCBI ptt file)||123, 270|
|CAC1659||CAC1659||Predicted membrane protein (NCBI ptt file)||270, 282|
|CAC1741||CAC1741||Uncharacterized conserved protein, YLBM B.subtilis ortholog (NCBI ptt file)||151, 270|
|CAC1763||CAC1763||Predicted endonuclease (NCBI ptt file)||166, 270|
|CAC1848||cmk||Cytidylate kinase (NCBI ptt file)||35, 351|
|CAC1947||CAC1947||Phage related transcriptional regulator (Xre family) (NCBI ptt file)||270, 272|
|CAC1972||CAC1972||Predicted membrane protein (NCBI ptt file)||191, 351|
|CAC2027||CAC2027||Hypothetical protein (NCBI ptt file)||270, 328|
|CAC2030||CAC2030||Hypothetical protein (NCBI ptt file)||270, 281|
|CAC2054||CAC2054||Hypothetical protein (NCBI ptt file)||270, 313|
|CAC2097||CAC2097||Hypothetical protein (NCBI ptt file)||270, 317|
|CAC2099||CAC2099||Hypothetical protein (NCBI ptt file)||270, 320|
|CAC2114||CAC2114||Predicted pseudouridylate synthase, YLYB B.subtilis ortholog (NCBI ptt file)||26, 270|
|CAC2188||CAC2188||Protein containing a domain related to multimeric flavodoxin WrbA family (NCBI ptt file)||351, 355|
|CAC2247||CAC2247||Site-specific recombinase, DNA invertase Pin homolog (NCBI ptt file)||270, 301|
|CAC2259||CAC2259||Predicted transcriptional regulator of MarR-family (NCBI ptt file)||270, 351|
|CAC2322||CAC2322||Hypothetical protein (NCBI ptt file)||4, 351|
|CAC2341||CAC2341||Collagenase family protease (NCBI ptt file)||51, 351|
|CAC2492||CAC2492||Predicted membrane, YNAG B.subtilis ortholog (NCBI ptt file)||270, 294|
|CAC2512||CAC2512||Hypothetical protein (NCBI ptt file)||133, 270|
|CAC2559||CAC2559||Hypothetical protein (NCBI ptt file)||183, 351|
|CAC2566||CAC2566||Possible rRNA methylase (SAM-dependent methyltransferase superfamily), YTQB B.subtilis (NCBI ptt file)||58, 351|
|CAC2609||CAC2609||Cytidine deaminase family enzyme (NCBI ptt file)||270, 320|
|CAC2668||CAC2668||Hypothetical protein (NCBI ptt file)||270, 317|
|CAC2698||CAC2698||Hypothetical protein (NCBI ptt file)||5, 351|
|CAC2835||gntP||Gluconate permease, gntP (NCBI ptt file)||270, 288|
|CAC2900||splB||Spore photoproduct lyase, SPL related protein (NCBI ptt file)||132, 351|
|CAC2901||CAC2901||Predicted membrane protein (NCBI ptt file)||298, 351|
|CAC2918||pmi||Mannose-6 phospate isomelase (NCBI ptt file)||270, 360|
|CAC2939||CAC2939||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||258, 351|
|CAC3391||CAC3391||Membrane associated signal transduction histidine kinase (NCBI ptt file)||51, 351|
|CAC3404||CAC3404||Uncharactecterized conserved membrane protein, possible ABC-type MDR permease (NCBI ptt file)||246, 351|
|CAC3567||topB||Topoisomerase B (NCBI ptt file)||66, 270|
|CAC3628||oppF||Oligopeptide ABC transporter, ATPase component (NCBI ptt file)||270, 294|
|CAC3629||oppD||Oligopeptide ABC transporter, ATPase component (NCBI ptt file)||270, 294|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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