Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2293(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2293
|Gene||Common Name||Description||Module membership|
|CAC0022||asd||Aspartate-semialdehyde dehydrogenase (NCBI ptt file)||176, 231|
|CAC0213||CAC0213||Protein containing LysM motif repeat (NCBI ptt file)||80, 110|
|CAC0331||CAC0331||Uncharacterized membrane protein, homolog of YPAA B.subtilis (NCBI ptt file)||147, 231|
|CAC0392||CAC0392||Peptodoglycan-binding domain (NCBI ptt file)||110, 248|
|CAC0516||dnaE||DNA polimerase III, alpha chain (dnaE) (NCBI ptt file)||146, 231|
|CAC0735||CAC0735||Transmembrane protein, ortholog TM1408 (NCBI ptt file)||231, 267|
|CAC0807||CAC0807||Cold shock protein (NCBI ptt file)||231, 233|
|CAC1047||CAC1047||Ribonucleotide reductase, vitamin B12-dependent (NCBI ptt file)||231, 238|
|CAC1257||rpl21||Ribosomal protein L21 (NCBI ptt file)||61, 231|
|CAC1288||rpsU||Ribosomal protein S21 (NCBI ptt file)||128, 231|
|CAC1299||dnaG||DNA primase, DNAG (NCBI ptt file)||231, 286|
|CAC1389||CAC1389||Protein containing ChW-repeats and cell-adhesion domain (NCBI ptt file)||110, 248|
|CAC1532||CAC1532||Protein containing ChW-repeats (NCBI ptt file)||110, 231|
|CAC1573||CAC1573||Uncharacterized protein, YJDF B.subtilis ortholog (NCBI ptt file)||90, 231|
|CAC1746||plsX||Fatty acid/phospholipid biosynthesis enzyme (NCBI ptt file)||194, 231|
|CAC2050||CAC2050||Predicted membrane protein (NCBI ptt file)||4, 110|
|CAC2122||CAC2122||Conserved membrane protein (NCBI ptt file)||67, 231|
|CAC2293||CAC2293||Hypothetical secreted protein (NCBI ptt file)||110, 231|
|CAC2305||SpoVAC||Stage V sporulation AC, SpoVAC (NCBI ptt file)||110, 118|
|CAC2393||CAC2393||Uncharacterized ABC transporter, ATPase component (NCBI ptt file)||231, 267|
|CAC2394||CAC2394||Transcriptional regulator, LysR family (NCBI ptt file)||40, 231|
|CAC2467||CAC2467||Hypothetical protein (NCBI ptt file)||110, 267|
|CAC2468||CAC2468||Predicted acetyltransferase (NCBI ptt file)||110, 317|
|CAC2482||CAC2482||Carbonic anhydrase (NCBI ptt file)||218, 231|
|CAC2599||CAC2599||Hypothetical protein (NCBI ptt file)||110, 267|
|CAC2602||CAC2602||Spermidine synthase (NCBI ptt file)||110, 341|
|CAC2644||carB||Carbamoylphosphate synthase large subunit (NCBI ptt file)||110, 250|
|CAC2645||carA||Carbamoylphosphate synthase small subunit (NCBI ptt file)||110, 250|
|CAC2675||CAC2675||Uncharcterized protein, YECD B.subtilis homolog (NCBI ptt file)||34, 231|
|CAC2775||CAC2775||Phosphohydrolase from calcineurin family (NCBI ptt file)||11, 231|
|CAC2934||CAC2934||Predicted transcriptional regulator (NCBI ptt file)||218, 231|
|CAC2937||CAC2937||Ketopantoate reductase PanE/ApbA (NCBI ptt file)||231, 302|
|CAC3046||CAC3046||Transcriptional regulator, LytR family (NCBI ptt file)||90, 231|
|CAC3167||CAC3167||Uncharacterized conserved protein (NCBI ptt file)||110, 221|
|CAC3412||CAC3412||Predicted protein-S-isoprenylcysteine methyltransferase (NCBI ptt file)||110, 248|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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