Organism : Clostridium acetobutylicum | Module List :
Membrane associated methyl-accepting chemotaxis protein (with HAMP domain) (NCBI ptt file)
Functional Annotations (5)
|Methyl-accepting chemotaxis protein||cog/ cog|
|signal transducer activity||go/ molecular_function|
|signal transduction||go/ biological_process|
Regulation information for CAC2746(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2746
Module neighborhood information for CAC2746
|Gene||Common Name||Description||Module membership|
|CAC0117||121||protein cheY homolog (NCBI ptt file)||107, 285|
|CAC0118||cheA||Chemotaxis protein cheA (NCBI ptt file)||94, 107|
|CAC0120||CAC0120||Membrane-associated methyl-accepting chemotaxis protein with HAMP domain (NCBI ptt file)||107, 156|
|CAC0443||CAC0443||Methyl-accepting chemotaxis protein (NCBI ptt file)||1, 122|
|CAC0475||CAC0475||HD-GYP domain (NCBI ptt file)||107, 298|
|CAC0624||CAC0624||Hypothetical protein (NCBI ptt file)||122, 251|
|CAC1101||CAC1101||Hypothetical protein, CF-34 family(identical) (NCBI ptt file)||122, 302|
|CAC1229||CAC1229||Hypothetical protein, CF-34 family(identical) (NCBI ptt file)||122, 186|
|CAC2147||flhA||Flagellar biosynthesis protein FlhA (NCBI ptt file)||122, 355|
|CAC2148||fliR/flhB||fusion of flagellar biosynthesis proteins FliR and FlhB (NCBI ptt file)||122, 355|
|CAC2150||fliP||Flagellar biosynthesis protein FliP (NCBI ptt file)||122, 355|
|CAC2151||fliZ||Flagellar biosynthesis protein FliZ (NCBI ptt file)||122, 355|
|CAC2167||CAC2167||Flagellin family protein (NCBI ptt file)||96, 122|
|CAC2171||CAC2171||Predicted glycosyltransferase (NCBI ptt file)||96, 107|
|CAC2173||CAC2173||Glycosyltransferase (NCBI ptt file)||96, 107|
|CAC2175||CAC2175||Glycosyltransferase (NCBI ptt file)||96, 107|
|CAC2176||CAC2176||Glycosyltransferase domain containing protein (NCBI ptt file)||90, 107|
|CAC2184||CAC2184||Uncharacterized protein, homolog HI1244 from Haemophilus influenzae (NCBI ptt file)||93, 122|
|CAC2186||CAC2186||Glycosyltransferase (NCBI ptt file)||107, 355|
|CAC2187||spsE||Sialic acid synthase (NCBI ptt file)||107, 122|
|CAC2215||fliY||Flagellar switch protein FliY, contains CheC-like domain (NCBI ptt file)||122, 359|
|CAC2325||CAC2325||Possible cell wall hydrolase containing N-acetylglucosaminidase domain and ChW-repeats (NCBI ptt file)||93, 122|
|CAC2522||CAC2522||Glycosyltransferase (NCBI ptt file)||107, 156|
|CAC2524||CAC2524||Uncharacterized conserved membrane protein (NCBI ptt file)||107, 191|
|CAC2525||CAC2525||Uncharacterized conserved membrane protein (NCBI ptt file)||107, 156|
|CAC2533||CAC2533||Protein containing ChW-repeats (NCBI ptt file)||107, 156|
|CAC2746||CAC2746||Membrane associated methyl-accepting chemotaxis protein (with HAMP domain) (NCBI ptt file)||107, 122|
|CAC2998||CAC2998||TPR-repeat-containing protein (NCBI ptt file)||1, 122|
|CAC3041||CAC3041||O-actetyl transferase related protein (NCBI ptt file)||122, 319|
|CAC3371||CAC3371||2-enoate reductase (Two distinct NAD(FAD)-dependent dehydrogenase domains) (NCBI ptt file)||122, 216|
|CAC3650||CAC3650||HD-GYP domain containing protein (NCBI ptt file)||122, 319|
|CAC3731||spoOJ||Stage 0 sporulation J, ParB family of DNA-binding proteins (NCBI ptt file)||122, 160|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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