Organism : Clostridium acetobutylicum | Module List :
Uncharacterized protein homolog of yveG B.subtilis (NCBI ptt file)
Functional Annotations (2)
|cell outer membrane||go/ cellular_component|
|integral to membrane||go/ cellular_component|
Regulation information for CAC3321(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC3321
|cell outer membrane||go/ cellular_component|
|integral to membrane||go/ cellular_component|
Module neighborhood information for CAC3321
|Gene||Common Name||Description||Module membership|
|CAC0055||CAC0055||Uncharacterized predicted metal-binding protein, ortholog of Streptomyces (2808777) (NCBI ptt file)||71, 185|
|CAC0093||CAC0093||Transcriptional regulators, LysR family (NCBI ptt file)||216, 301|
|CAC0160||CAC0160||Predicted acetyltransferase (NCBI ptt file)||185, 345|
|CAC0239||CAC0239||Histidine kinase-like ATPase (NCBI ptt file)||185, 346|
|CAC0372||CAC0372||Sensory transduction histidine kinase (HisKA and HATPase damains) (NCBI ptt file)||216, 224|
|CAC0417||CAC0417||Similar to arsenate reductase (NCBI ptt file)||71, 185|
|CAC0420||CAC0420||Conserved membrane protein, possible homolog of CAAX-like membrane endopeptidase (NCBI ptt file)||185, 247|
|CAC0541||CAC0541||SAM-dependent methyltransferase (NCBI ptt file)||185, 223|
|CAC0577||CAC0577||Endo-arabinase related enzyme (family 43 glycosyl hydrolase domain and ricin B-like domain) (NCBI ptt file)||150, 216|
|CAC0597||gerKB||Spore germination protein, gerKB (NCBI ptt file)||115, 185|
|CAC0690||CAC0690||Endoglucanase, aminopeptidase M42 family (NCBI ptt file)||216, 238|
|CAC0747||CAC0747||Secreted protein containing uncharacterized conserved protein of ErfK family (NCBI ptt file)||49, 185|
|CAC0849||CAC0849||Predicted transcriptional regulator (NCBI ptt file)||151, 216|
|CAC0851||CAC0851||Ortholog ygiD E.coli (NCBI ptt file)||167, 185|
|CAC0858||CAC0858||Phosphinothricin acetyltransferase (NCBI ptt file)||71, 216|
|CAC0860||CAC0860||Two-component response regulator (NCBI ptt file)||185, 206|
|CAC1040||CAC1040||Predicted amidohydrolases (NCBI ptt file)||185, 346|
|CAC1083||CAC1083||Predicted membrane-associated metal-binding protein (NCBI ptt file)||185, 251|
|CAC1444||CAC1444||Uncharacterized conserved membrane protein, similar to MDR (VANZ) ORF of Enterococcus (NCBI ptt file)||132, 216|
|CAC1490||CAC1490||Hypothetical protein (NCBI ptt file)||185, 259|
|CAC1491||CAC1491||Predicted ATPase (NCBI ptt file)||146, 185|
|CAC1497||CAC1497||Uncharacterized protein, homolog of YCGL B.subtilis (NCBI ptt file)||216, 240|
|CAC1557||CAC1557||Predicted acetyltransferase (NCBI ptt file)||1, 185|
|CAC1581||CAC1581||Response regulator (CheY-like receiver domain and HTH DNA-binding domain) (NCBI ptt file)||185, 259|
|CAC1670||CAC1670||Response regulator (CheY-like receiver domain and DNA-binding HTH domain) (NCBI ptt file)||185, 326|
|CAC1970||CAC1970||Hypothetical protein (NCBI ptt file)||185, 326|
|CAC2244||CAC2244||HAD superfamily hydrolases, YKRA B.subtilis ortholog (NCBI ptt file)||216, 251|
|CAC2521||CAC2521||Hypothetical protein, CF-41 family (NCBI ptt file)||94, 216|
|CAC2546||CAC2546||Transcriptional regulator, FadR family (NCBI ptt file)||185, 276|
|CAC2558||CAC2558||Hypothetical protein (NCBI ptt file)||147, 216|
|CAC2689||CAC2689||Uncharacterized protein, YJCM B.subtilis ortholog (NCBI ptt file)||4, 216|
|CAC2759||CAC2759||Response regulator (CheY receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||71, 185|
|CAC2760||CAC2760||Membrane-associated sensory histidine kinase with HAMP domain (NCBI ptt file)||132, 216|
|CAC2837||CAC2837||Fusion HD-GYP domain and HD-hydrolase domain (NCBI ptt file)||212, 216|
|CAC3024||CAC3024||acyl-CoA thioesterase family protein (NCBI ptt file)||216, 309|
|CAC3027||CAC3027||Predicted phosphohydrolase (NCBI ptt file)||216, 223|
|CAC3321||CAC3321||Uncharacterized protein homolog of yveG B.subtilis (NCBI ptt file)||185, 216|
|CAC3371||CAC3371||2-enoate reductase (Two distinct NAD(FAD)-dependent dehydrogenase domains) (NCBI ptt file)||122, 216|
|CAC3435||CAC3435||Hypothetical protein (NCBI ptt file)||185, 359|
|CAC3484||CAC3484||Short-chain alcohol dehydrogenase family protein (NCBI ptt file)||206, 216|
|CAC3581||CAC3581||HAD superfamily hydrolase (NCBI ptt file)||185, 289|
|CAC3606||CAC3606||Transcriptional regulator, AcrR family (NCBI ptt file)||74, 216|
|CAC3607||CAC3607||Possible ketopantoate reductase PanE/ApbA (NCBI ptt file)||83, 216|
|CAC3656||CAC3656||Uncharacterized conserved protein, yaiN/yohL family (NCBI ptt file)||185, 291|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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