Organism : Clostridium acetobutylicum | Module List :
Multimeric flavodoxin WrbA family protein (NCBI ptt file)
Functional Annotations (1)
|Multimeric flavodoxin WrbA||cog/ cog|
Regulation information for CAC3505(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC3505
|Multimeric flavodoxin WrbA||cog/ cog|
Module neighborhood information for CAC3505
|Gene||Common Name||Description||Module membership|
|CAC0069||CAC0069||Predicted iron-binding protein, hemerythrin (NCBI ptt file)||212, 253|
|CAC0251||CAC0251||Uncharacterized Fe-S protein (fragment) (NCBI ptt file)||165, 212|
|CAC0289||CAC0289||Response regulator (CheY domain, HTH domain) (NCBI ptt file)||94, 212|
|CAC0511||CAC0511||Predicted P-loop containing kinase, similar to B.subtilis yvcJ (NCBI ptt file)||102, 291|
|CAC0535||CAC0535||Metal-dependent hydrolase of the beta-lactamase superfamily II (NCBI ptt file)||47, 291|
|CAC0551||CAC0551||Uncharacterized protein with possible cell attachment and effacing function; Cell-adhesion domain (NCBI ptt file)||94, 212|
|CAC0590||ribD||Riboflavin biosynthesis protein RIBD (pirimidine deaminase and pirimidine reductase) (NCBI ptt file)||266, 291|
|CAC0591||ribB||Riboflavin synthase alpha chain (NCBI ptt file)||221, 291|
|CAC0592||ribA||Riboflavin biosynthes protein RIBA (GTPcyclohydrolase/3,4-dihydroxy-2-butanone 4-phosphate synthase) (NCBI ptt file)||221, 291|
|CAC0593||ribH||Riboflavin synthase beta-chain (NCBI ptt file)||221, 291|
|CAC0595||CAC0595||Glutamine amidotranspherase (possibly involved in histidine and purine biosinthesis) (NCBI ptt file)||83, 291|
|CAC0599||CAC0599||Transcriptional regulator, GntR family (NCBI ptt file)||223, 291|
|CAC0731||CAC0731||FUSION: Nucleoside-diphosphate-sugar epimerase and GAF domain (NCBI ptt file)||94, 212|
|CAC0732||CAC0732||Predicted membrane protein (NCBI ptt file)||94, 212|
|CAC0733||CAC0733||Predicted membrane protein (NCBI ptt file)||94, 212|
|CAC0734||CAC0734||Glycosyltransferases I (lipopolysaccharide biosynthesis protein-related protein) (NCBI ptt file)||94, 212|
|CAC0749||CAC0749||HD hydrolase superfamily protein (NCBI ptt file)||154, 291|
|CAC0796||CAC0796||CDP-diglyceride synthetase (NCBI ptt file)||212, 218|
|CAC0797||CAC0797||Phosphoenolpyruvate synthase (NCBI ptt file)||202, 212|
|CAC0801||CAC0801||Phosphoenolpyruvate synthase (NCBI ptt file)||94, 212|
|CAC0802||CAC0802||Hypothetical protein (NCBI ptt file)||212, 353|
|CAC0848||CAC0848||Uncharacterized conserved protein, YitT family (NCBI ptt file)||90, 212|
|CAC1636||CAC1636||Uncharacterized protein, homolog of B. firmus (2654481) (NCBI ptt file)||291, 349|
|CAC1638||CAC1638||Hypothetical protein, CF-37 family(almost identical) (NCBI ptt file)||291, 349|
|CAC1639||CAC1639||Hypothetical protein, CF-7 family (NCBI ptt file)||291, 349|
|CAC1640||CAC1640||Uncharacterized protein, YQCG B.subtilis homolog; CF-7 family (NCBI ptt file)||291, 349|
|CAC1671||CAC1671||Predicted ATPase related to the helicase subunit of the Holliday junction resolvase (NCBI ptt file)||291, 326|
|CAC1672||CAC1672||Rad3-related DNA helicase (NCBI ptt file)||291, 326|
|CAC1966||CAC1966||Surface-layer related glycoprotein (NCBI ptt file)||70, 291|
|CAC1969||CAC1969||Possible plasmid transfer factor, TraK (NCBI ptt file)||287, 291|
|CAC2483||CAC2483||Methyl-accepting chemotaxis protein (NCBI ptt file)||94, 212|
|CAC2541||CAC2541||Reductase/isomerase/elongation factor common domain (NCBI ptt file)||70, 291|
|CAC2544||etfB||Electron-transferring flavoprotein small subunit (NCBI ptt file)||41, 291|
|CAC2837||CAC2837||Fusion HD-GYP domain and HD-hydrolase domain (NCBI ptt file)||212, 216|
|CAC3335||CAC3335||Short-chain alcohol dehydrogenase family enzyme (NCBI ptt file)||212, 356|
|CAC3336||CAC3336||Predicted cAMP-binding domain, regulatory protein, diverged (NCBI ptt file)||212, 356|
|CAC3350||CAC3350||Putative intracellular protease/amidase (ThiJ family) (NCBI ptt file)||230, 291|
|CAC3505||CAC3505||Multimeric flavodoxin WrbA family protein (NCBI ptt file)||212, 291|
|CAC3510||CAC3510||Membrane associated methyl-accepting chemotaxis protein (with HAMP domain) (NCBI ptt file)||94, 212|
|CAC3576||CAC3576||Dioxygenase related to 2-nitropropane dioxygenase (NCBI ptt file)||6, 291|
|CAC3656||CAC3656||Uncharacterized conserved protein, yaiN/yohL family (NCBI ptt file)||185, 291|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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