Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC3528(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC3528
|Gene||Common Name||Description||Module membership|
|CAC0008||CAC0008||Predicted HD superfamily hydrolase (NCBI ptt file)||8, 130|
|CAC0028||hydA||Hydrogene dehydrogenase (NCBI ptt file)||8, 130|
|CAC0292||CAC0292||Hypothetical protein (NCBI ptt file)||162, 276|
|CAC0616||CAC0616||Predicted membrane protein (NCBI ptt file)||8, 162|
|CAC0775||CAC0775||ATP-utilizing enzyme of the PP-loop superfamily (NCBI ptt file)||8, 130|
|CAC0967||CAC0967||Probably membrane protein (NCBI ptt file)||162, 233|
|CAC0997||ndk||Probable nucleoside-diphosphate kinase N-terminal domain (NCBI ptt file)||11, 162|
|CAC1388||manC||Mannose-6-phosphate isomerase (NCBI ptt file)||162, 341|
|CAC1523||CAC1523||Fructokinase (NCBI ptt file)||162, 302|
|CAC1568||CAC1568||Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) (NCBI ptt file)||134, 162|
|CAC1641||CAC1641||Ankyrin repeats containing protein (NCBI ptt file)||162, 244|
|CAC1698||CAC1698||Uncharacterized conserved protein, YTCG B.subtilis ortholog (NCBI ptt file)||130, 152|
|CAC1778||CAC1778||Amidase from nicotinamidase family (NCBI ptt file)||130, 303|
|CAC1832||lexA||SOS regulatory protein LexA (NCBI ptt file)||77, 162|
|CAC1873||CAC1873||Hypothetical protein (NCBI ptt file)||99, 162|
|CAC2070||CAC2070||Hypothetical protein (NCBI ptt file)||31, 162|
|CAC2107||CAC2107||Contains cell adhesion domain (NCBI ptt file)||130, 198|
|CAC2245||CAC2245||Stress-induced protein OsmC (NCBI ptt file)||40, 130|
|CAC2312||CAC2312||Rhamnosyl transferase, rfbQ (NCBI ptt file)||8, 130|
|CAC2313||CAC2313||Glycosyltransferase (NCBI ptt file)||8, 130|
|CAC2314||CAC2314||Membrane protein involved in the export of O-antigen and teichoic acid, RfbX family (NCBI ptt file)||8, 130|
|CAC2395||CAC2395||Predicted phosphatase, YWOA B.subtilis ortholog (NCBI ptt file)||40, 130|
|CAC2417||CAC2417||Hypothetical protein (NCBI ptt file)||152, 162|
|CAC2451||CAC2451||SoxR family transcriptional regulator fused to SAM-dependent methyltransferase (NCBI ptt file)||162, 341|
|CAC2466||CAC2466||Predicted aldoketomutase of glyoxalase I family (NCBI ptt file)||162, 322|
|CAC2487||CAC2487||Predicted acetyltransferase (NCBI ptt file)||130, 162|
|CAC2500||CAC2500||Uncharacterized conserved membrane protein, YgiH/UPF0078 family (NCBI ptt file)||130, 162|
|CAC2501||CAC2501||Membrane protein, predicted transporter of cations and cationic drugs (NCBI ptt file)||130, 198|
|CAC2502||CAC2502||Predicted permease (NCBI ptt file)||130, 341|
|CAC2659||CAC2659||Putative stress-responsive transcriptional regulator PspC (NCBI ptt file)||31, 162|
|CAC2663||CAC2663||Protein containing cell-wall hydrolase domain (NCBI ptt file)||130, 155|
|CAC2819||murE||UDP-N-acetylmuramyl tripeptide synthase, MURE (NCBI ptt file)||130, 252|
|CAC2872||CAC2872||Predicted membrane protein in FoF1-type ATP synthase operon (NCBI ptt file)||76, 162|
|CAC3193||CAC3193||Hypothetical protein (NCBI ptt file)||130, 149|
|CAC3374||CAC3374||Predicted acetyltransferase (NCBI ptt file)||140, 162|
|CAC3528||CAC3528||Hypothetical protein (NCBI ptt file)||130, 162|
|CAC3700||CAC3700||Hypothetical protein, CF-44 family (NCBI ptt file)||162, 304|
|CAC3701||CAC3701||Hypothetical protein, CF-44 family (NCBI ptt file)||162, 167|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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