Cre02.g073700.t2.1 Uroporphyrinogen decarboxylase

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre02.g073700.t2.1 chromosome_2 Uroporphyrinogen decarboxylase CDS 76253 79727 - 3 474

Phytozome

Locus Genomic View Functional Annotation
Cre02.g073700.t2.1 Cre02.g073700.t2.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
UPD3 g1305.t1 JGI195818 30785831 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0024
motif_0024_1

motif_0024_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3.4e-16
Motif Bicluster: 
bicluster_0024
Width: 
24
Number of Sites: 
1
Consensus: 
GTAaATACCAGCCCAAACTAAACC
motif_0024_2

motif_0024_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.2e-20
Motif Bicluster: 
bicluster_0024
Width: 
23
Number of Sites: 
1
Consensus: 
cCacCaCCacCacCAcCnCCACC
 0.17
bicluster_0146
motif_0146_1

motif_0146_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000081
Motif Bicluster: 
bicluster_0146
Width: 
15
Number of Sites: 
1
Consensus: 
CAgCAGCAcCaGCAg
motif_0146_2

motif_0146_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
7400
Motif Bicluster: 
bicluster_0146
Width: 
15
Number of Sites: 
1
Consensus: 
CAGCAAgcTGCAAGC
 0.22

GO Terms

GO:0004853 GO:0006779 -

uroporphyrinogen decarboxylase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2.

porphyrin-containing compound biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI195818

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