Cre10.g440050.t1.2 chloroplast stem-loop binding protein of 41 kDa

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre10.g440050.t1.2 chromosome_10 chloroplast stem-loop binding protein of 41 kDa CDS 2901812 2905839 + 4 027

Phytozome

Locus Genomic View Functional Annotation
Cre10.g440050.t1.2 Cre10.g440050.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
CSP41a, SNE12 g10833.t1, Cre10.g440050.t1.1 JGI205568 30790885 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0033
motif_0033_1

motif_0033_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000011
Motif Bicluster: 
bicluster_0033
Width: 
21
Number of Sites: 
1
Consensus: 
AGCagcAgCnGCAcCAGCagC
motif_0033_2

motif_0033_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
29
Motif Bicluster: 
bicluster_0033
Width: 
23
Number of Sites: 
1
Consensus: 
CcTCCtCCtcCtCcgcCTCCAnC
 0.10
bicluster_0054
motif_0054_1

motif_0054_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.032
Motif Bicluster: 
bicluster_0054
Width: 
24
Number of Sites: 
1
Consensus: 
CTGCnGcTGcaGCgGcTGCtGCgG
motif_0054_2

motif_0054_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
170
Motif Bicluster: 
bicluster_0054
Width: 
24
Number of Sites: 
1
Consensus: 
cCGgggCCACCAgcgCCACCTgCa
 0.10

GO Terms

GO:0003824 GO:0050662 GO:0044237 -

catalytic activity

GO Category: 
molecular_function
Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

coenzyme binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.

cellular metabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways by which individual cells transform chemical substances.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI205568

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