Cre16.g663900.t1.2 hydroxymethylbilane synthase

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre16.g663900.t1.2 chromosome_16 hydroxymethylbilane synthase CDS 2916388 2919687 + 3 299

Phytozome

Locus Genomic View Functional Annotation
Cre16.g663900.t1.2 Cre16.g663900.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g16030.t1, Cre16.g663900.t1.1 JGI194475 30777054 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0069
motif_0069_1

motif_0069_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.14
Motif Bicluster: 
bicluster_0069
Width: 
21
Number of Sites: 
1
Consensus: 
GCTGctgCtGcCGcTgCCGnt
motif_0069_2

motif_0069_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
8.5
Motif Bicluster: 
bicluster_0069
Width: 
15
Number of Sites: 
1
Consensus: 
aATGaAAcagTGcaA
 0.14
bicluster_0211
motif_0211_1

motif_0211_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
0.0000000000000036
Motif Bicluster: 
bicluster_0211
Width: 
15
Number of Sites: 
1
Consensus: 
CAGcAGCaGcaGCAG
motif_0211_2

motif_0211_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
0.00000000000031
Motif Bicluster: 
bicluster_0211
Width: 
21
Number of Sites: 
1
Consensus: 
ACACACACAnACtcACatgcA
 0.22

GO Terms

GO:0004418 GO:0033014 -

hydroxymethylbilane synthase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: H(2)O + 4 porphobilinogen = hydroxymethylbilane + 4 NH(4)(+).

tetrapyrrole biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI194475

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