PHATRDRAFT_13095 loc794679 protein (RRM_II_PABPs)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_13095	chr_10	loc794679 protein (RRM_II_PABPs)	566303	566768	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0008

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_II_PABPs		RNA recognition motif in type II polyadenylate-binding proteins; This subfamily corresponds to the...	cl17169	142.43	2.63E-45	4 - 76	specific	240752
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	142.43	2.63E-45	4 - 76	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	78.065	6.58E-19	1 - 97	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
268661		Not available	163693	262278	362850	Cre06.g274500.t1.2	AT5G51120.3	409429

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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