PHATRDRAFT_13396 sec24-like copii protein (Sec24-like)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_13396 chr_11 sec24-like copii protein (Sec24-like) 211114 213156 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0239

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0023
 0.40

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the... cl00057 317.293 3.89E-103 128 - 369 specific 238756
vWFA superfamily Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von... - 317.293 3.89E-103 128 - 369 superfamily 260163
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 116.843 5.42E-31 370 - 454 superfamily 254596
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 116.843 5.42E-31 370 - 454 superfamily 254596
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 74.8753 5.08E-16 467 - 580 superfamily 252815
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 74.8753 5.08E-16 467 - 580 superfamily 252815
zf-Sec23_Sec24 superfamily Sec23/Sec24 zinc finger; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the... - 72.9788 6.05E-16 53 - 91 superfamily 252812
zf-Sec23_Sec24 superfamily Sec23/Sec24 zinc finger; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the... - 72.9788 6.05E-16 53 - 91 superfamily 252812
Gelsolin Gelsolin repeat; Gelsolin repeat. cl15697 55.3854 1.50E-09 621 - 677 specific 250009
ADF_gelsolin superfamily Actin depolymerization factor/cofilin- and gelsolin-like domains; Actin depolymerization factor/... - 55.3854 1.50E-09 621 - 677 superfamily 265764

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
269747 Not available 265673 320236 468573 Cre02.g091150.t1.1 AT3G07100.1 487506

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments