269747 COG5028
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269747 chr_14 COG5028 314743 318314 + COG5028

Synonyms

NCBI ID Ensembl Genomes exon ID
7451213 Thaps269747.2, Thaps269747.3, Thaps269747.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0251

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0016
 0.55

Most Highly Correlated Transcripts

bd1023

(bd1023) atpD
0.9425

bd1378

(bd1378) atpI
0.9402

bd1318

(bd1318) atpF
0.9396

bd598

(bd598) atpG
0.9352

bd1290

(bd1290) atpH
0.934

bd668

(bd668) NA
0.9314

bd467

(bd467) Cytochrome_b_N
0.9289

bd258

(bd258) HU
0.9264

bd2073

(bd2073) psbB
0.9199

bd1304

(bd1304) Ycf4
0.9127

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the... cl00057 321.145 3.76E-103 233 - 470 specific 238756
vWFA superfamily Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von... - 321.145 3.76E-103 233 - 470 superfamily 260163
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 113.762 1.13E-29 474 - 558 superfamily 254596
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 113.762 1.13E-29 474 - 558 superfamily 254596
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 82.5793 1.39E-18 570 - 667 superfamily 252815
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 82.5793 1.39E-18 570 - 667 superfamily 252815
zf-Sec23_Sec24 superfamily Sec23/Sec24 zinc finger; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the... - 70.6676 5.25E-15 158 - 196 superfamily 252812
zf-Sec23_Sec24 superfamily Sec23/Sec24 zinc finger; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the... - 70.6676 5.25E-15 158 - 196 superfamily 252812
COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and... - 580.98 0 25 - 830 multi-dom 227361

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13396 PHATR_13396 265673 320236 468573 Cre02.g091150.t1.1 AT3G07100.1 487506

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0005515 GO:0006886 GO:0006888 GO:0030127 GO:0003779 -

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0006888

ER to Golgi vesicle-mediated transport

Details: 
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO Category: 
BP

GO:0030127

COPII vesicle coat

Details: 
One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.
GO Category: 
CC

GO:0003779

actin binding

Details: 
Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
GO Category: 
MF

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