PHATRDRAFT_13520 20 kd nuclear cap binding protein (RRM_NCBP2)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_13520	chr_11	20 kd nuclear cap binding protein (RRM_NCBP2)	141257	141637	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0389

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_NCBP2		RNA recognition motif found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins;...	cl17169	122.655	5.17E-37	23 - 100	specific	240686
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	122.655	5.17E-37	23 - 100	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	82.3022	5.56E-20	8 - 127	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
19374		Not available	163725	300273	47691	Cre10.g437850.t1.1	AT5G44200.2	303573

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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