19374 RRM_NCBP2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
19374 chr_5 RRM_NCBP2 1738040 1738741 + RRM_NCBP2

Synonyms

NCBI ID Ensembl Genomes exon ID
7445210 Thaps19374.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0427

Most Highly Correlated Transcripts

bd643

(bd643) NA
0.8928

bd738

(bd738) NA
0.8792

bd690

(bd690) NA
0.8751

bd1801

(bd1801) NA
0.8703

bd877

(bd877) NA
0.8683

bd737

(bd737) NA
0.8207

13065

(CAT1_2) Carn_acyltransf superfamily
0.8202

bd1934

(bd1934) NA
0.8191

20794

hypothetical protein
0.8175

263002

(Tp_HSF_2.7b) regulator [Rayko]
0.8152

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_NCBP2 RNA recognition motif found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins;... cl17169 114.951 1.24E-32 49 - 126 specific 240686
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 114.951 1.24E-32 49 - 126 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 83.4578 2.23E-19 35 - 134 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13520 PHATR_13520 163725 300273 47691 Cre10.g437850.t1.1 AT5G44200.2 303573

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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