PHATRDRAFT_13581 dna topoisomerase ii (PLN03128)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_13581 chr_12 dna topoisomerase ii (PLN03128) 543966 547938 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0148

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0152
 0.19

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type... cl02783 162.456 1.43E-45 247 - 395 specific 239563
TopoII_MutL_Trans superfamily MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-... - 162.456 1.43E-45 247 - 395 superfamily 261445
HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example:... cl00075 44.945 1.18E-05 53 - 150 specific 238030
HATPase_c superfamily Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example:... - 44.945 1.18E-05 53 - 150 superfamily 260175
TOP4c superfamily DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC... - 377.293 8.38E-119 706 - 1161 superfamily 238111
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 207.923 5.56E-62 440 - 573 superfamily 260587
PLN03128 DNA topoisomerase 2; Provisional - 1861.69 0 1 - 1165 multi-dom 215593

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 161658 235795 Not available Not available Not available 559851

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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