PHATRDRAFT_16065 shwachman-bodian-diamond syndrome (COG1500)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_16065 chr_23 shwachman-bodian-diamond syndrome (COG1500) 170199 170954 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0399

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0117
 0.31

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SBDS superfamily Shwachman-Bodian-Diamond syndrome (SBDS) protein; This family is highly conserved in species... - 126.485 1.21E-36 15 - 106 superfamily 250417
SBDS superfamily Shwachman-Bodian-Diamond syndrome (SBDS) protein; This family is highly conserved in species... - 126.485 1.21E-36 15 - 106 superfamily 250417
SBDS_C superfamily SBDS protein C-terminal domain; This family is highly conserved in species ranging from archaea to... - 76.5411 9.54E-18 113 - 228 superfamily 255327
COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis] - 150.931 2.44E-44 11 - 240 multi-dom 224417

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
40265 Not available 162977 201640 453755 Cre01.g017500.t1.2 AT1G43860.1 360984

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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