PHATRDRAFT_16073 rh26_orysj dead-box atp-dependent rna helicase 26 (DEADc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_16073 chr_23 rh26_orysj dead-box atp-dependent rna helicase 26 (DEADc) 399655 401076 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0215

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0239
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 228.138 1.02E-71 1 - 197 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 228.138 1.02E-71 1 - 197 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 88.834 5.00E-21 222 - 353 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 88.834 5.00E-21 222 - 353 superfamily 238034
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 153.417 1.46E-43 1 - 200 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 212491 178176 62849 Cre16.g662000.t1.2 AT5G63630.1 468056

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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