PHATRDRAFT_16262 chromatin remodeling factor chrom1 isoform 1 (SNF2_N)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_16262 chr_24 chromatin remodeling factor chrom1 isoform 1 (SNF2_N) 351869 353371 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0245

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0085
 0.45

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 95.7676 1.52E-23 321 - 448 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 95.7676 1.52E-23 321 - 448 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 87.0076 2.77E-20 23 - 183 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 87.0076 2.77E-20 23 - 183 superfamily 266587
SNF2_N SNF2 family N-terminal domain; This domain is found in proteins involved in a variety of processes... - 287.646 1.42E-93 7 - 305 multi-dom 249654

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263947 Not available 138192 197700 429120 Not available AT2G13370.1 560689

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments