263947 SNF2_N
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263947 chr_12 SNF2_N 1021258 1024893 + SNF2_N

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0293

Most Highly Correlated Transcripts

262607

WD40 superfamily
0.958

262171

CAP_ED
0.9566

2065

hypothetical protein
0.9532

262645

Glyco_18
0.9499

263859

GH18_chitinase-like superfamily
0.9468

33984

PKc_like superfamily
0.946

35501

HELICc
0.9438

262826

DUF3608 superfamily
0.9415

262527

pi 4-kinase
0.9411

33225

MYSc
0.9406

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 97.0227 5.50E-23 541 - 701 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 97.0227 5.50E-23 541 - 701 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 63.796 9.45E-12 851 - 952 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 63.796 9.45E-12 851 - 952 superfamily 238034
SNF2_N SNF2 family N-terminal domain; This domain is found in proteins involved in a variety of processes... - 301.513 3.64E-94 525 - 823 multi-dom 249654

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16262 PHATRDRAFT_16262 138192 197700 Not available Not available Not available 560689

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005524 GO:0006118 GO:0000785 GO:0003682 GO:0005634 GO:0006333 GO:0008026 GO:0003676 GO:0004386 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0000785

chromatin

Details: 
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
GO Category: 
CC

GO:0003682

chromatin binding

Details: 
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006333

chromatin assembly or disassembly

Details: 
The formation or destruction of chromatin structures.
GO Category: 
BP

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

Add comment

Log in to post comments