PHATRDRAFT_16603 mitochondrial translation initiation factor if- (PRK04004)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_16603 chr_27 mitochondrial translation initiation factor if- (PRK04004) 274989 276788 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0140

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0154
 0.20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF2_eIF5B Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; IF2/eIF5B contribute to... cl17170 231.977 1.67E-72 4 - 220 specific 206674
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 231.977 1.67E-72 4 - 220 superfamily 266525
aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a... cl02787 165.403 1.63E-48 232 - 341 specific 239674
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 36.9136 0.00191598 489 - 546 superfamily 261449
Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... cl02787 36.9136 0.00191598 489 - 546 specific 238652
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 36.9136 0.00191598 489 - 546 superfamily 261449
IF-2 superfamily Translation-initiation factor 2; IF-2 is a translation initiator in each of the three main... - 70.5535 1.37E-14 354 - 449 superfamily 256778
PRK04004 translation initiation factor IF-2; Validated - 531.292 0 1 - 584 multi-dom 235195

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
273 Not available 178267 183872 66324 Cre02.g078100.t1.1 AT1G76720.1 477507

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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