PHATRDRAFT_16704 splicing factorsubunit 1 isoform 1 (HSH155)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_16704	chr_28	splicing factorsubunit 1 isoform 1 (HSH155)	46189	49368	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0315

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SF3b1 superfamily		Splicing factor 3B subunit 1; This family consists of several eukaryotic splicing factor 3B subunit...	-	122.902	6.82E-32	24 - 171	superfamily	255108
SF3b1 superfamily		Splicing factor 3B subunit 1; This family consists of several eukaryotic splicing factor 3B subunit...	-	122.902	6.82E-32	24 - 171	superfamily	255108
HSH155		U2 snRNP spliceosome subunit [RNA processing and modification]	-	1188.6	0	151 - 1039	multi-dom	227508

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
27556		Not available	209669	225983	447448	Cre12.g494100.t1.1	AT5G64270.1	288446

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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