27556 HSH155
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
27556 chr_3 HSH155 1544155 1547605 + HSH155

Synonyms

NCBI ID Ensembl Genomes exon ID
7449508 Thaps27556.2, Thaps27556.4, Thaps27556.1, Thaps27556.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0413

Most Highly Correlated Transcripts

262371

AAA_12 superfamily
0.9256

11085

hypothetical protein
0.9233

268550

(ALD1) ALDH-SF superfamily
0.9219

1057

PIH1 superfamily
0.9205

25419

AP_muniscins_like_MHD
0.9181

6608

CAP10 superfamily
0.9085

22620

(Tp_AP2-EREBP1) regulator [Rayko]
0.9079

22603

COG3899
0.9049

1249

hypothetical protein
0.902

268606

TBCC
0.9009

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SF3b1 superfamily Splicing factor 3B subunit 1; This family consists of several eukaryotic splicing factor 3B subunit... - 91.7004 4.00E-21 43 - 113 superfamily 255108
HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] - 1170.88 0 104 - 969 multi-dom 227508

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16704 PHATRDRAFT_16704 209669 225983 447448 Cre12.g494100.t1.1 AT5G64270.1 288446

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

Not available -

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