PHATRDRAFT_19552 matrix attachment region binding protein (SIK1)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_19552 chr_6 matrix attachment region binding protein (SIK1) 19871 21615 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0243

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0102
 0.21

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nop superfamily Putative snoRNA binding domain; This family consists of various Pre RNA processing... - 242.578 1.68E-77 264 - 416 superfamily 250875
Nop superfamily Putative snoRNA binding domain; This family consists of various Pre RNA processing... - 242.578 1.68E-77 264 - 416 superfamily 250875
NOSIC NOSIC (NUC001) domain; This is the central domain in Nop56/SIK1-like proteins. cl06890 91.0328 1.63E-22 172 - 223 specific 254604
NOSIC superfamily NOSIC (NUC001) domain; This is the central domain in Nop56/SIK1-like proteins. - 91.0328 1.63E-22 172 - 223 superfamily 263088
NOP5NT superfamily NOP5NT (NUC127) domain; This N terminal domain is found in RNA-binding proteins of the NOP5 family. - 84.1483 7.54E-20 1 - 69 superfamily 254636
NOP5NT superfamily NOP5NT (NUC127) domain; This N terminal domain is found in RNA-binding proteins of the NOP5 family. - 84.1483 7.54E-20 1 - 69 superfamily 254636
SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and... - 380.977 1.58E-127 45 - 416 multi-dom 224415

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
22635 Not available 273707 197895 75659 Cre10.g441400.t1.2 AT5G27120.1 246404

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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