PHATRDRAFT_21388 (COG1204)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_21388 chr_12 (COG1204) 576403 583008 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0129

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0188
 0.15

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 64.2808 1.84E-11 1378 - 1534 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 64.2808 1.84E-11 1378 - 1534 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 64.5664 1.41E-11 738 - 905 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 64.5664 1.41E-11 738 - 905 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 64.2808 1.84E-11 1378 - 1534 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 64.2808 1.84E-11 1378 - 1534 superfamily 266587
Sec63 Sec63 Brl domain; This domain (also known as the Brl domain) is required for assembly of functional... cl19361 295.3 4.30E-89 1850 - 2175 specific 251597
Sec63 superfamily Sec63 Brl domain; This domain (also known as the Brl domain) is required for assembly of functional... - 295.3 4.30E-89 1850 - 2175 superfamily 267714
Sec63 Sec63 Brl domain; This domain (also known as the Brl domain) is required for assembly of functional... cl19361 295.3 4.30E-89 1850 - 2175 specific 251597
Sec63 superfamily Sec63 Brl domain; This domain (also known as the Brl domain) is required for assembly of functional... - 295.3 4.30E-89 1850 - 2175 superfamily 267714

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 255202 322449 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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