PHATRDRAFT_22658 rna cyclase homolog (18S_RNA_Rcl1p)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_22658	chr_19	rna cyclase homolog (18S_RNA_Rcl1p)	24032	25249	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0201

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0226	0.15	45 9200

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
EPT_RTPC-like superfamily		This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3'...	-	334.28	7.89E-112	14 - 381	superfamily	260328
18S_RNA_Rcl1p		18S rRNA biogenesis protein RCL1; Members of this strictly eukaryotic protein family are not RNA 3...	-	418.165	1.80E-144	14 - 402	multi-dom	234198

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
29705		Not available	223291	200589	63451	Cre09.g400367.t1.1	AT5G22100.1	487939

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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