PHATRDRAFT_22713 ypt1_phyinras-like gtp-binding protein ypt1 (Rab1_Ypt1)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_22713	chr_19	ypt1_phyinras-like gtp-binding protein ypt1 (Rab1_Ypt1)	194570	195759	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0078

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0143	0.35	6100 640

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Rab1_Ypt1		Rab GTPase family 1 includes the yeast homolog Ypt1; Rab1/Ypt1 subfamily. Rab1 is found in every...	cl17170	343.927	2.19E-121	7 - 172	specific	206661
Ras_like_GTPase superfamily		Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase...	-	343.927	2.19E-121	7 - 172	superfamily	266525
PLN03110		Rab GTPase; Provisional	-	202.851	2.73E-65	4 - 203	multi-dom	178657

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
22792		Not available	168632	234485	439272	Cre12.g560150.t1.2	AT5G47200.1	309136

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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